Protein Info for ABID97_RS15410 in Variovorax sp. OAS795

Annotation: dipeptide ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 625 PF00005: ABC_tran" amino acids 33 to 198 (166 residues), 92.6 bits, see alignment E=1e-29 amino acids 346 to 495 (150 residues), 112.1 bits, see alignment E=9.6e-36 PF08352: oligo_HPY" amino acids 249 to 281 (33 residues), 31.6 bits, see alignment (E = 5.2e-11) amino acids 548 to 593 (46 residues), 32.2 bits, see alignment 3.4e-11

Best Hits

Swiss-Prot: 72% identical to GSIA_PECAS: Glutathione import ATP-binding protein GsiA (gsiA) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K13892, glutathione transport system ATP-binding protein (inferred from 97% identity to vap:Vapar_3002)

Predicted SEED Role

"Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (625 amino acids)

>ABID97_RS15410 dipeptide ABC transporter ATP-binding protein (Variovorax sp. OAS795)
MSTPALALPDGRVLAVDDLNVRFSTSERTVDAVKNLSFHVDHGETLAVVGESGSGKSVTS
LALMRLVEHGGGRILGGRMAFRRRNGEVLDLAQARDTTMRGIRGADIAMIFQEPMTSLNP
VFTAGDQIAEAIRIHQGKRNAAARAEALRMLELVRIPEARNVLDRFPHQLSGGMRQRVMI
AMALSCKPQLLIADEPTTALDVTIQAQILQLIRELQKEMRMGVLFITHDMGVVAEIADRV
LVMYRGDKVEAGSSDSVFSSPQHPYTRALLSAVPKLGAMQGTDLPAKFELLRTEGSPDTV
PCADTQPQTTVREEAGPILRVRDLVTRFDVRSGIFGRVKRRVHAVEKISFDLYPGETLAL
VGESGCGKSTTGRSLLRLVESQSGAIEFGGRNIRELPTRELQALRRNIQFIFQDPFASLD
PRVTVGFSIMEPLLIHGIAKGAEAQQRVDWLLQKVGLPPEVAQRYPHEFSGGQRQRIAIA
RALALNPKVVVADESVSALDVSIQAQIVNLMLDLQRELGVAFLFISHDMAVVERISHRVA
VMYLGQIVEIGPRRAVFEAPQHAYTRKLMAAVPVADPSRRHKPRALLEGEIPSPIRAVGD
EPDVPPLVQVAPGHFVARHAIGGAF