Protein Info for ABID97_RS15000 in Variovorax sp. OAS795

Annotation: high-potential iron-sulfur protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details TIGR01409: Tat (twin-arginine translocation) pathway signal sequence" amino acids 13 to 38 (26 residues), 16.8 bits, see alignment 3.5e-07 PF01355: HIPIP" amino acids 47 to 111 (65 residues), 82.4 bits, see alignment E=1.1e-27

Best Hits

Swiss-Prot: 50% identical to HIP_RALSO: High-potential iron-sulfur protein (hip) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: None (inferred from 84% identity to vap:Vapar_6243)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (115 amino acids)

>ABID97_RS15000 high-potential iron-sulfur protein (Variovorax sp. OAS795)
MTNRKIEGSLGASRRDFVGRAAGGACLLAALPVRVAWAAPPRVEESDETAQQLGYRHDTK
TVDKKKHPRHAASQECVNCALWQGTPTEAWAGCAMFGRKQIAARGWCQAWAAKPA