Protein Info for ABID97_RS14345 in Variovorax sp. OAS795

Annotation: chromate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 13 to 13 (1 residues), see Phobius details transmembrane" amino acids 14 to 34 (21 residues), see Phobius details amino acids 69 to 74 (6 residues), see Phobius details amino acids 94 to 118 (25 residues), see Phobius details amino acids 139 to 157 (19 residues), see Phobius details amino acids 163 to 180 (18 residues), see Phobius details amino acids 185 to 201 (17 residues), see Phobius details PF02417: Chromate_transp" amino acids 15 to 197 (183 residues), 108.5 bits, see alignment E=1.9e-35

Best Hits

KEGG orthology group: K07240, chromate transporter (inferred from 95% identity to vap:Vapar_2214)

Predicted SEED Role

"Chromate transport protein ChrA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>ABID97_RS14345 chromate transporter (Variovorax sp. OAS795)
MSHVAIAMQWHDWLALFGQYLLLSLLSISGAITTVPDMHRYLVAQHGWLTDAQFSSSVAI
AQAAPGPNVLFVALMGWNVGLNAGGGIGAGPGAWLLGFFGLLVTMVGIMLPSTTLTYLAT
RWGHRNRDRRGVRAFKQGMAPVVVGLLIATGWVLAAGNHAGDAPAWHLWLLSAVATLVVW
RTRIHLLWLLGAGALLGAVGFV