Protein Info for ABID97_RS13075 in Variovorax sp. OAS795

Annotation: glycoside hydrolase family 5 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF00150: Cellulase" amino acids 82 to 352 (271 residues), 205.1 bits, see alignment E=7.7e-65

Best Hits

KEGG orthology group: K01179, endoglucanase [EC: 3.2.1.4] (inferred from 53% identity to xcv:XCV0029)

Predicted SEED Role

"macromolecule metabolism; macromolecule degradation; degradation of polysaccharides"

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (382 amino acids)

>ABID97_RS13075 glycoside hydrolase family 5 protein (Variovorax sp. OAS795)
MTHKPRFELPQLAMAMAFTLSLAGCGGGGGGGGIASTPGLVPSTAAPAAPATPPEAAAPP
DATAAPVATSPKPTWRGVSLAGAEFGESKLPGIHGQDYIYPANDSVGYYKRKGMNLVRLP
FLWERLQPQLNQELDSNELERLKSFVAAATAGGTDVLLDPHNYARWHASVIGSAEVPQAA
FADLWRRLALQFKDNPRVLFGLMNEPHDMSTETWVAAANAGIAAIRATGAANVITVPGNG
WTGAHSWFANSYGTPNAEAMLAVTDSGNNLVFEVHQYLDGDSAGKLDTCVSETIGVERLR
DFTGWLKTHGKRGMLGEFAGGNNETCRLGITAMLQHMKDNDAQWAGWAWWAGGPWWGSYP
FSIEPQSSGDRPQMNWLTPFLN