Protein Info for ABID97_RS12975 in Variovorax sp. OAS795

Annotation: pentapeptide repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 PF00805: Pentapeptide" amino acids 35 to 67 (33 residues), 25.5 bits, see alignment 1.1e-09 amino acids 105 to 138 (34 residues), 19.2 bits, see alignment 1.1e-07 amino acids 126 to 162 (37 residues), 21.1 bits, see alignment 2.7e-08 amino acids 204 to 239 (36 residues), 35.4 bits, see alignment 9.4e-13 amino acids 249 to 288 (40 residues), 19.5 bits, see alignment 8.8e-08 amino acids 264 to 301 (38 residues), 26.2 bits, see alignment 6.8e-10 amino acids 289 to 327 (39 residues), 39.2 bits, see alignment 5.8e-14 PF13576: Pentapeptide_3" amino acids 198 to 239 (42 residues), 27.2 bits, see alignment 5.5e-10

Best Hits

KEGG orthology group: None (inferred from 44% identity to bte:BTH_II0861)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>ABID97_RS12975 pentapeptide repeat-containing protein (Variovorax sp. OAS795)
MSMDGPATFTDADAALAAIAQGGRRLADARVAGLDFGGRDLSKVHWRNVDLAKARLEGAN
LEGAVFERCSLPAAVLAGANLTATQWQACDLQGAVLRTAHGSRISMSECSLRSADAAGAQ
WTHAMFDQCDLSAANFADAALLQSDAHQCRFEGTDFSRAVLQRFTAMDAELGAARFDATD
LTQAYLAGARLAGQRLGNCVLRMAQFNRADLSGADFSKAQLEQAQFQHATLEGAVFSGAA
GLHVRFGDARMARALLDDASFEMSDFARADLAGARLTQLRASRSNFSGARCQAAQMTRAV
FVHSDFSNADLSGADCSHADFSGANLHRVAERGTNWTDAVRRGSYGTDAERARAEDWRPA
PATLS