Protein Info for ABID97_RS12965 in Variovorax sp. OAS795

Annotation: DUF2169 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 318 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details PF09937: DUF2169" amino acids 20 to 289 (270 residues), 223 bits, see alignment E=2.9e-70

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (318 amino acids)

>ABID97_RS12965 DUF2169 domain-containing protein (Variovorax sp. OAS795)
MKILKPDNMAVVHRALRLQGHDRLCVGLVALFPLASPGLDALRPETELWQRLPQVPGAPA
VLDEGYPKPQAEFLLYGEACAPGGKAVGELAVRARVGSLDKPLIVHGDRRWSALGTLSSA
APFTRMPIVPATAFGGPGDAVNPLGKAAPALPNVEDPRQPITFKDDHPAPAGYWGVDSSA
PQRQSHLGAVGKPWLQKTWPHLPEDTAGGYFQSAPPDQRMAGFFVGNEAIELSHLHPEQP
RIESALPALRGRCFALRGKGADAVFKEIETRAETVWLMPGLGLGAVLYRGTLDVDDEEAQ
NVACVVADWEPDARCAAA