Protein Info for ABID97_RS12960 in Variovorax sp. OAS795

Annotation: type VI secretion system tip protein TssI/VgrG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1076 TIGR03361: type VI secretion system Vgr family protein" amino acids 17 to 509 (493 residues), 316.9 bits, see alignment E=2.4e-98 TIGR01646: Rhs element Vgr protein" amino acids 27 to 509 (483 residues), 296.9 bits, see alignment E=3.1e-92 PF05954: Phage_GPD" amino acids 35 to 337 (303 residues), 243.6 bits, see alignment E=2.9e-76 PF04717: Phage_base_V" amino acids 402 to 468 (67 residues), 36.7 bits, see alignment 4.4e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1076 amino acids)

>ABID97_RS12960 type VI secretion system tip protein TssI/VgrG (Variovorax sp. OAS795)
MSTIAQRLPADRRFEFSSQACPSDTFAVVRMSGFEAISRPYRFELVLVSDDARIDLARVL
AANALLKILAPNDTRQATPYAGMLAEFDQLHQVGGFTFYRAVLVPRLWQLSLYRNSEVYL
HEQTIPEIVEGILKGARLNPANDYTLKLKGQYRPRSYVCQYQETPLAFVSRWLEREGIYY
YFEQGGDADKLVLIDDKVAQPPAAVAVNYRPADELDVGLAPDSVQGFVCRTRPLPKTLVL
QDYNHRRASMPLVAQAEVSTSGIGEEMLYGENFRTEEEGQRYASIRAEELRCGGRAFSGE
ATAVGLRSGHFMELTQHYRDDFNGRYLVTEITHEGSQAGALLAGLKTPFNEREGQTAYRN
SFVALPAATQFRPARSTPKPRVAGTMSATVDAEGSGEYAELDEHGQYKVQIPFDRTEKGA
AKGSAPVRMASPYAGSEHGMHFPLHKGTEVLLSFADGDPDQPVILGAVPNSVTPNVVDQR
NPHDNLISTKGGNQMLMADTKGKEVIWLNSPFHKSSIGIGSVHPEGGGSIYEATTGGKDS
VSFGHSNSMSFGTSNALSLGTKASISAAFTNDVSVGTKIGIDLSSSVAWKANLGQLGSWS
DGLMNVSIDDSSSVKLSRSFGGSSSGTATISAGAVASEVSAIKLETSLKWMRGLISAYTA
VNFTQSTLFGMAVNASDNGALLEDKAIDQKGAKSKQDDADLKFAADEAELKKQEKAALEK
KEPPAEYKTDEEKAAWRRREEKAIDDKFKNRAAAQAAPSNPDRKTLQGWPGIITKFGFDA
ISNVAVMAAFQVYARKIAKLIKQLKVVSEMTLGETGIVQSVNGESAPPVPASLVRSEVRM
SPTSGIELKAGSRASWRQAWAEGYIDLDAWSHIFRGRDVMSMDAPFGAMRDSGTQVGMAY
SGADDKSVFGSSASKLVADAQSLQLAAPTIEIGPRTLMNPQRLAAQAGLDAAMLSLTGAG
ASVVAAEQALKTAKDLDADALVLDPLEATLATNRALEVVARDLVKQQSAALAKAEAKVAL
SPMASGITIDNQLISLTQGTVGMQISSQGISLSVNTAVADFKAISTRINSNLIKLG