Protein Info for ABID97_RS12515 in Variovorax sp. OAS795

Annotation: DUF5801 repeats-in-toxin domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1226 PF19116: DUF5801" amino acids 454 to 617 (164 residues), 82 bits, see alignment E=3.3e-27 amino acids 631 to 795 (165 residues), 78 bits, see alignment E=5.6e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1226 amino acids)

>ABID97_RS12515 DUF5801 repeats-in-toxin domain-containing protein (Variovorax sp. OAS795)
MPATFTPGSTVTLDETAGLQNPVATPVPAGDANDNDIATSSLPAAFTTRLTALGAGAPTK
AAVSGYNGSNTGTNAFTFSATGTVTDLSFVGLSGAPLDNFDSGLDTADGESIFLFTDATN
NNVVYGKTAGNVIVFAAYLEETGTPVTGAKIWMVQYEAIAHGDTANADDAVTLLDKVFVG
VSQDAEFNLADAPSGQNLFLMFTKANPTIVNGRISDVTIIATGKDPANQSGANSASTADD
INISTGDTINSSKAGGPTTFGTNSQMITEQEGIRFTFVTGARADVTIPNLDQNEADLESN
IDFTGMFGSRTADFDVVQLQSGKSAQVKVTAYSTAVESGNSFIDGYANDQMISITSVRVL
DSVTGAVYETYSNGTEAALSSAIAISISGGVATITGVKAGYSIEYTTSADHNRVLVENGA
ALNASGNTHADFDIGGFRLLQVSAATAEVGSMMRFEDDGPSIVLATPTDTAVVNTQDADT
IGVLTDTATTSFAGAFGTTSSSYGADGAGSIGTAFALGVKSQGGDSGLKSDGATIYLYQV
GGKVIGSTSATEGGILAGNTIFDLAVSTGGSVTLQQFAEIDHALPGSSSNYAAQQATMAD
DLVTLSGSVTLTDADGDTANDSKVLNIGANIKFDDHGPSVTLAAPTDTAVLNVQDAQTIG
ANTDSAVQDFSTAFGVTASSYGADGAGSTASVFALGVATAGGASGLTSDGAAIKLYLVAG
SVIGSTAAAVGDINAGNTIFDVAVSAGGSVTLRQFAEIDHALPGVGSNYAAQQATLADTL
ITLTNTVTLTDGDGDTASDSKVLNIGANIKFDDNGPTVTAISDLNGANDAQPIAGTYNFA
VGADDVDNASTDGIVLTGLTGTTAGGRPITGAAVSHFAETDTTVTYHFSFNYYAGPTSTT
TQAATGTVIFNKADGTYSFDLDQVFGGQTTFSTGAPQASFNYDTEGNNSPEIVVQQYSSD
FFGVLSARAATPPSDTSDLVSGGDHVFTAGETFNSISAGFVNVATNTLGVNSDTVQAGEL
LNFDYYRSNPVSNPTVVSPPPRPDATIVGTDRAYADAINITIDQITDGEDVAVLLKLVNK
TDSSITTTRLLVANAATDYQAGTGGQKIVSIGLDDYDSANFKISGVQVMSSTEDVTGTGV
SLSTHGAVNLTAAGMNYADTADNDVFKIIKIEVITSSTINSDVDLNFTGQLVDGDADFAG
FDFDVHLEIDGVANLIGTTQQTEAIA