Protein Info for ABID97_RS11965 in Variovorax sp. OAS795

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1536 PF01339: CheB_methylest" amino acids 29 to 204 (176 residues), 147.1 bits, see alignment E=2.7e-46 PF03705: CheR_N" amino acids 239 to 290 (52 residues), 56.4 bits, see alignment (E = 1.2e-18) PF01739: CheR" amino acids 304 to 493 (190 residues), 173.2 bits, see alignment E=2.8e-54 PF13596: PAS_10" amino acids 765 to 870 (106 residues), 99.1 bits, see alignment 1.4e-31 TIGR00229: PAS domain S-box protein" amino acids 768 to 879 (112 residues), 23.9 bits, see alignment 1.8e-09 amino acids 880 to 1005 (126 residues), 78.3 bits, see alignment E=2.7e-26 amino acids 1006 to 1132 (127 residues), 66 bits, see alignment E=1.8e-22 PF08448: PAS_4" amino acids 773 to 873 (101 residues), 35.5 bits, see alignment 6.3e-12 amino acids 891 to 999 (109 residues), 33.5 bits, see alignment 2.6e-11 amino acids 1022 to 1127 (106 residues), 27.6 bits, see alignment 1.8e-09 PF13426: PAS_9" amino acids 778 to 871 (94 residues), 12.5 bits, see alignment 9.2e-05 amino acids 896 to 997 (102 residues), 36 bits, see alignment 4.3e-12 amino acids 1023 to 1125 (103 residues), 48.5 bits, see alignment 5.7e-16 PF13188: PAS_8" amino acids 884 to 926 (43 residues), 19.8 bits, see alignment (E = 3.5e-07) amino acids 1010 to 1061 (52 residues), 19.1 bits, see alignment (E = 5.7e-07) PF00989: PAS" amino acids 884 to 995 (112 residues), 52.6 bits, see alignment 2.7e-17 amino acids 1010 to 1122 (113 residues), 35.7 bits, see alignment 4.5e-12 PF08447: PAS_3" amino acids 907 to 987 (81 residues), 44.7 bits, see alignment 8e-15 PF00512: HisKA" amino acids 1160 to 1225 (66 residues), 56.8 bits, see alignment (E = 1.1e-18) PF02518: HATPase_c" amino acids 1273 to 1384 (112 residues), 98.1 bits, see alignment 2.7e-31 PF00072: Response_reg" amino acids 1414 to 1523 (110 residues), 73.7 bits, see alignment 8e-24

Best Hits

Predicted SEED Role

"Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)" in subsystem Bacterial Chemotaxis (EC 2.1.1.80)

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.80

Use Curated BLAST to search for 2.1.1.80

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1536 amino acids)

>ABID97_RS11965 PAS domain S-box protein (Variovorax sp. OAS795)
MNPDRAEEELADQLDDAVPSRGYRMLPVVGLGGSAGGIDAVGAFFEATPADTGMAFVVVL
SAPAANENALAEVLRRSTPMRVVQVAGRERIQPNTVYAIAPGKSLRTRGEHIELAALPPG
PGRHVAVDYFFRTLADTHGPHAIAVVLSGPDGDGTIGVKRIKERGGLTIAQEPQEAQHGA
MAQSAIATGMIDWVLPAREIGARIHAYYRIERQLRLPPEQVPGDGKDDAPPAADLDEAAF
REVLAFVQSRSGRDFANYKRATVLRRIGRRMQVNGVSNLTAYLDCLRTRPGEAGALLQDM
LISVTNFFRDNECFAALEGMVHELFRNKTAADTVRVWVVACATGEEAYSIAMLLAEHART
LESPPSIQIFATDLDEDAVQAAREGVYPTVAEADVSEERLRRFFVREQRGYRVRRELREM
VLFAVHDVLKDSPFSRIDLATCRNLLIYLNRDAQARVFDTLHFSLLPGGRLFLGASEAVD
EESPLFSVIDKKHRIYAQRHAPKAALPIPEGRSSTALALELKRPPPVIPGAAFAQLQRRT
APPMADGRAMSWAELHLRLLDRLAPPSILLDADHEMLHISPAATPFLHFSGGEPSRNVLR
AIVPDLKAELQTALYHVNERREPVDVAPVWVRLGPTAEVEVSLHVMPVEEFGGFMVLLRK
GETASGRSSIVVPRVDAEPIAEHLEREVRRLKSQLRETVEQYETSTEELKASNEELHAMN
EELHSATEELETSREELQSINEELTTVNHELKSKVDDLGQANSDMLNLMDATAIATVFLD
RDFHVTRFTPSAVAIFKLIATDVGRPLSDLTTPLDYPQLADDARRVLETLQPTEREVGDS
AGNWYLARVRPYRTIEDRIAGVVLTFVDITERKDAQESLRQSQERFSAIVNQASVGVAQT
RLDGEITFANTCYHDLMGYGEHELVGLRAIELVHAADHAAISALFGRLERHGEPFESESR
NVRKDGSFIWLHYSVTVLTDASGKPDSALIVCSDISERKGAEEALRASEERFRLMLENAV
DYAIFSVDMERCVKSWNTGAERLLGYTESEILGRSADIIFTEEDRAAGAPAEEARNALSA
GRAADDRLHQRKDGSRFWASGALMPMHNGEGAVIGMVKVLRDQSEQRAAQQEVEQSRSEL
LDALRANEAARQALEAADAAKDRFLAVLSHELRNPLASISGAAELLAPEQLPTPEQGRAA
RVVRRQAAAMKVLLGDLLDVSSLRRGRLVLRRERVTAQAIVDAALEATGPLMELGRHRLE
AEIADAEIVLDADPMRLTQVISNLLSNAAKYTPDKGEIRLALHTEGDDAVFSVTDNGIGM
DPDTVDTMFEMFTQSVHGHERSAGGLGIGLALVRNIVEMHGGTVSGESRGLGLGSRFTVR
IPQAETRLAEAGAAQGPDRDLPASAPGEESPQRVLLADDNTDALWGMARMLSISGFSVKT
ADNGVDALRVAEHFRPDAAVLDIGMPGLDGHEVARRIRAQPWGRGMLLVAATGWGQPEDR
LAALEAGFDEHLVKPVAAADVQRLLRARDGLSGPGS