Protein Info for ABID97_RS11730 in Variovorax sp. OAS795
Annotation: fumarylacetoacetate hydrolase family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: None (inferred from 60% identity to pna:Pnap_0618)MetaCyc: 37% identical to 2,4-didehydro-3-deoxy-L-fuconate hydrolase (Sphingomonas sp. SKA58)
RXN-12096 [EC: 3.7.1.26]
Predicted SEED Role
No annotation
MetaCyc Pathways
- D-arabinose degradation IV (4/6 steps found)
- L-arabinose degradation V (4/6 steps found)
- D-xylose degradation VI (3/5 steps found)
- L-fucose degradation III (4/8 steps found)
- L-rhamnose degradation III (3/7 steps found)
Isozymes
No predicted isozymesUse Curated BLAST to search for 3.7.1.26
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (282 amino acids)
>ABID97_RS11730 fumarylacetoacetate hydrolase family protein (Variovorax sp. OAS795) MKLLSYSHQGQARWGALVGERIADLQAASQGRFPTLPSALSQLGLPGIEALAEGALLDVA LRDVSLLPVVPDAPRIFCVGLNYEAHRVEAKRERTGQPTIFLRVASSQAGHGQPLVLPSE SACFDYEGEIAIVIGTGGRRIREEDAWTHVAGYAPYNDGSVRDWQAHTTQWTPGKNFPAT GGFGPWMVTRGEIADGQVLALTTRLNGETVQHATTEQLIFSMPSLVAYISTFTALEPGDV IVTGTPGGVGFKRQPPLYMRVGDVVEVEVEGVGTLSNRVCAE