Protein Info for ABID97_RS10630 in Variovorax sp. OAS795

Annotation: elongation factor P maturation arginine rhamnosyltransferase EarP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 TIGR03837: conserved hypothetical protein, PP_1857 family" amino acids 3 to 361 (359 residues), 411.3 bits, see alignment E=2e-127 PF10093: EarP" amino acids 3 to 361 (359 residues), 400.2 bits, see alignment E=4.9e-124

Best Hits

KEGG orthology group: None (inferred from 85% identity to vap:Vapar_1780)

Predicted SEED Role

"FIG00974036: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (366 amino acids)

>ABID97_RS10630 elongation factor P maturation arginine rhamnosyltransferase EarP (Variovorax sp. OAS795)
MQWDIFCRVIDNHGDLGVCWRLASQLAALGERVRLWIDDATALRWMAPTGCDGVRVVDWL
DPAAVARAAAAPPPDVLIEAFGCDPAPELVARFAEAPAEGAPARCWINLEYLSAEPYVER
LHGLPSPVFKGPGAGLTKRFFYPGFTPATGGLLREPGLLERRARFDRAQWLAAHDIPWRE
GECLVSLFCYEPPALAQLLEQLAAGTEPTRLLVTSGRAAHALGAFFASPELPAGRSPQGF
GALSISYLPYLTQFDFDHLLWACDLNFVRGEDSLVRALWAGAPLVWQIYPQDDDAHHVKL
GAWLDWIGAPPTLRQFHHAWNGFGDAPLPPAETEGPWRETAQAAREKLCSQQDLVTQLRH
LVAGKS