Protein Info for ABID97_RS09985 in Variovorax sp. OAS795

Annotation: tripartite tricarboxylate transporter substrate binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF03401: TctC" amino acids 42 to 311 (270 residues), 230.4 bits, see alignment E=1.6e-72

Best Hits

Swiss-Prot: 37% identical to Y4329_BORBR: UPF0065 protein BB4329 (BB4329) from Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)

KEGG orthology group: None (inferred from 79% identity to pol:Bpro_2834)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (316 amino acids)

>ABID97_RS09985 tripartite tricarboxylate transporter substrate binding protein (Variovorax sp. OAS795)
MAAAAAGLLAFGAGIAQAQDWPTRPIKVLVGSAPGGGTDAMARAVADRLGPLLKQAVVVD
NRPGASNTLAVDATAKSTDGHTMVMGVVTAHAIAPHLLKLNYDSNRDLVPVAFVGAVPNV
LVVSNSVPADSVQALVKLAKHEPGKLNYATSGAGSTQHIAAEMFKDAAGIDLVHVPYKGS
GPALIDLVGGQVQLSFDTMPSVIGQIRNNKVRALAVTTAKRNPQLPNVPTLAEAGVPNIE
MSAWYGIYMPAATPKAVQARVHDAVNQVLAMPETKTRLDAIGAEITPMTQAQFAQFHAAE
YKRFGDVIKKNHIKLD