Protein Info for ABID97_RS09920 in Variovorax sp. OAS795

Annotation: EI24 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 78 to 106 (29 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 198 to 220 (23 residues), see Phobius details amino acids 223 to 255 (33 residues), see Phobius details PF07264: EI24" amino acids 8 to 218 (211 residues), 102.9 bits, see alignment E=1.3e-33

Best Hits

KEGG orthology group: None (inferred from 91% identity to vap:Vapar_1630)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>ABID97_RS09920 EI24 domain-containing protein (Variovorax sp. OAS795)
MRLLLDSFWRAVAYCMLPRVIVLSLLPLGLMVLLAAGFGYFFWDATVAWTREALDAWPLL
SSFWGWIGRLFSGDATAVLAPLVVVVAATPAIVVVSLLIVAGLMAPPLTALVALRRFPAL
ERKKGASFFGSVARSLAVTVLALVALVVSMPLWLIPPLVLVLPPLIWGWLTYRVMSFDAL
AEHASPEERATILRTHRLPLLCIGVLCGYLGAAPSIVWASGLLFAAAFFVLVPLAIWIYT
LVFAFSALWFGHYCLDALAQLRAQRGASAAATEGTPALEADQAVLSQWKSP