Protein Info for ABID97_RS09775 in Variovorax sp. OAS795

Annotation: phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1063 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details PF13550: Phage-tail_3" amino acids 554 to 720 (167 residues), 99 bits, see alignment E=1.4e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1063 amino acids)

>ABID97_RS09775 phage tail protein (Variovorax sp. OAS795)
MSTQQILGVVGGVVGAFFGYPQLGFVVGSLVGGLLTPGEKTEGPRVDDLKVQVSTYGVGI
PLMYGTERVGGNVVWSTDKIEVEETTGGKGGGPENTTYRYYVHMGVVLCDTPRDGSTVSI
VQIFKDGKLIYDARSGIPIGSALASAENPHAYFVLYQGHADQLPDPGEEAWMGGPGSVPA
YRGVVRIRMNAIECPGGRVPQFSFVLSTNASTAPTGQVIVDFSSPSYNVITGLAKSDGSV
WNIGQFTNGGVITLFVSYGASTGEQRITNQLRFTGTDLTYYPMPAIGAEEPIAVYLSGAG
SGFVNLLNLETMVRVGLYSPETSSDFLPGMSGNHVEFMRAACDPTTGNYAIAFQDADVTP
AECPPLIFENGEVLSCDPISGVTAGIAFYDDVLYVLKAESNQWKIASRSAVDGTEVHAEV
AGAGPVGSANIQKSGLYASASGLYALIFPAGSSGLDVYKIDTTTMAWSLIAEQVPVGLDN
FGHFQRAFYASDDVVVVGPTVNGEYSVGFLRPLTVADVKVSDIIADQCDRAGESRYDVSG
IPDTDTLHGYKLQNPASARSNIDPLLTAFAIYIVDEDGLIKFKKYEDIVSEATVTYDELG
QAEDGAEPADAMPLNRAQEIDMPRSVSVSYIEPTFDYQTASEKEVRQITEATEDMIIELP
MATTSDHAKQVASMILFAKWRAQNTRSFKTSRKFAFLSPGDGVTVEYPRGTFRLWRITSM
TDTGALCEFNVEPGDAELYTQTAVGATGYVQQEVAPLASPTRLQLLDIPILRDEDNNAGI
YAALDNYADGWTGAELLVGYDDTSLVSRGTVSTDAPIGFAETVLGNASSGFVDESNIFTV
SIGNNDFESVTRDVLLANGAEFWAYGVPGRWEIGASAVGDSLGGGRYILSRHLRGQFGTE
ANAALHEEGDVFVLLRIAGMLRPSTGAGDIGQAQNYRAVSKGRSRDSVASQTYTNTGEGL
MPLSPVNLRRSNTNDLSVDRRSRLAMNNSTGALPLGEATEAWAWDFYTSSGFTTLIGSAL
TTTATVTAAQITSAGATPSGALYVRVSQLGDSIGRGHELQATI