Protein Info for ABID97_RS07645 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 transmembrane" amino acids 52 to 70 (19 residues), see Phobius details amino acids 76 to 100 (25 residues), see Phobius details amino acids 111 to 129 (19 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 175 to 200 (26 residues), see Phobius details amino acids 212 to 233 (22 residues), see Phobius details amino acids 264 to 288 (25 residues), see Phobius details amino acids 301 to 322 (22 residues), see Phobius details amino acids 329 to 347 (19 residues), see Phobius details amino acids 358 to 378 (21 residues), see Phobius details amino acids 390 to 413 (24 residues), see Phobius details amino acids 419 to 440 (22 residues), see Phobius details PF00083: Sugar_tr" amino acids 41 to 236 (196 residues), 50.7 bits, see alignment E=1.4e-17 PF07690: MFS_1" amino acids 53 to 402 (350 residues), 62.5 bits, see alignment E=3.5e-21

Best Hits

KEGG orthology group: None (inferred from 98% identity to vap:Vapar_4045)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (446 amino acids)

>ABID97_RS07645 MFS transporter (Variovorax sp. OAS795)
MTTTSSISPQGAQPVPNTSGNDARQGGDHSHIAPGEIAVGVIIGRASEYFDFFVYGIASV
LVFPAVFFPFEARLEGTLFAFVVFSFAFIARPFGTVISMAIQRRFGREAKLTIALFVLGT
STAGIAFLPGYASIGFTAIVLLSVFRFAQGLALGGSWDGLPSLLALNAPENRRGWYAMLG
QLGAPLGFFVASALFAYLYANLPLKDFLDWGWRYTFYVAFAINVVALFARLRLVATEEYS
RLLEERELQPTSVVELARSQGANLLIGAFAALASYALFHLITVFPLSWITLYSDQSITEF
LVVQMIGAVFCAGGIVASGLIADRVGRRFTLGGLAAMIAVFSGFAPTLLDGGRIGQDIFI
LLGFVLLGLSYGQAAGAVTSNFEPKYRYTGAALTADLAWLIGAAFAPLVALGLSANFGLA
YVSVYLLSGAVGTLAALGLNRALVRD