Protein Info for ABID97_RS07130 in Variovorax sp. OAS795

Annotation: D-arabinitol 4-dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 462 transmembrane" amino acids 375 to 393 (19 residues), see Phobius details PF01232: Mannitol_dh" amino acids 2 to 168 (167 residues), 114.3 bits, see alignment E=6e-37 PF08125: Mannitol_dh_C" amino acids 198 to 427 (230 residues), 247.1 bits, see alignment E=1.9e-77

Best Hits

Swiss-Prot: 62% identical to DALD_RALSO: D-arabinitol 4-dehydrogenase (dalD) from Ralstonia solanacearum (strain GMI1000)

KEGG orthology group: K00007, D-arabinitol 4-dehydrogenase [EC: 1.1.1.11] (inferred from 92% identity to vap:Vapar_1112)

Predicted SEED Role

"D-arabinitol 4-dehydrogenase (EC 1.1.1.11)" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization (EC 1.1.1.11)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.1.11

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (462 amino acids)

>ABID97_RS07130 D-arabinitol 4-dehydrogenase (Variovorax sp. OAS795)
MLHLGLGSFHRAHQAVYLQRLIDAGDTRWSLSGANIRPDMADVVAALQAQGGRYTLETVS
PAGEYRYEEIEAIREVLAWEPSLSAVIARGAAPSTRIVSFTVTEAGYYLDTKGKLDLTFA
DLSADIERARRSEPGGEGVTIYGAVCAILRARKAAQAGAVTLLNCDNLRHNGDRFRAGLL
QFIERAGDADLLAWVQANTACPNAMVDRITPRPPPELRARVQAATGRDDAAAITGESFIQ
WVIEDNFAAGRPDWARVGVELVASVQPYEEAKIRILNATHSCIAWAGTLAGLGFIHEGTH
HAAIRKVAFDYVTDDVIPCLSPSPIDLAAYRDVVLERFGNPAIRDTNQRVAADGFSKIPG
FIAPTVRERLAAGQPISSVAMLPALFLAFLQLWHRGALPYAYQDQGMDEAVARAICGAAD
PVLALCSDAGLWGPVAGDARLVDAVRGASARVKNLVNGGTKV