Protein Info for ABID97_RS04705 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 40 to 61 (22 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 95 to 114 (20 residues), see Phobius details amino acids 126 to 148 (23 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 204 to 228 (25 residues), see Phobius details amino acids 247 to 269 (23 residues), see Phobius details amino acids 281 to 300 (20 residues), see Phobius details amino acids 306 to 326 (21 residues), see Phobius details amino acids 338 to 365 (28 residues), see Phobius details amino acids 372 to 393 (22 residues), see Phobius details PF07690: MFS_1" amino acids 7 to 352 (346 residues), 116.5 bits, see alignment E=6.5e-38

Best Hits

KEGG orthology group: None (inferred from 86% identity to vpe:Varpa_0470)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (408 amino acids)

>ABID97_RS04705 MFS transporter (Variovorax sp. OAS795)
MLVALASAFALSQAFRTVGAMMATPLGGQFGLTPQQLGTWAGTFHFMFGIMQLAMGVSID
LFGVRRTVLAAFPLAIAGAALCAAAPSFGALLLGQALIGVGCAPAFLACTVFIARHFDAS
RFTAMSGLVMSLAGLGILFTGTPLALLIEAASWRAGYAVLAGFAVLSWLVIFWRVREPAR
TAEPTGPEVAPAERQSLRKAVRELLPLFAMPHTLGLLCFACVSYAAFITLRGLWLGPVLH
ERHGLSLVASGNVALVMTLTGMISPALFGRLDPGAARRARWMMACAAIGALMFGAMALTH
SRAVDIGLPIVYGLLSGYGVLQYAYARSAYPAAMTGRAMALLNMAMFLGVSLMQWTTGVA
ASWAVANGVETYRVVFLTIAGMLAAGTLAFLALPRASEAGSPRGVDHR