Protein Info for ABID97_RS04400 in Variovorax sp. OAS795

Annotation: DUF5682 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 854 PF18934: DUF5682" amino acids 43 to 804 (762 residues), 333.2 bits, see alignment E=1.8e-103

Best Hits

KEGG orthology group: None (inferred from 88% identity to vap:Vapar_6229)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (854 amino acids)

>ABID97_RS04400 DUF5682 family protein (Variovorax sp. OAS795)
MAIAGEDGRLPAALDAARLRLFGEDGIFFVPVRHHSPACAFALRALLREIRPAAVLIEGP
DDLGALLPLLQHAQTSAPVAWLCQSTREVPVDDPDPEVDARTRTESRTSFFPFCDYSPEW
IAVREGAALGARLGLIDLPWADKAWHRSESDDEEEGDARGAARSLMEERHFAHSRYLGAM
ASQLGCADHQELWDRLFELRATAALCDWRAFFGDVFSWCAMARLDYEPEVLEAELSLPRE
RHMAAHIRRWRNEVEGPIVVVTGGFHTLELIAQWREAKPSKAPAAREAPAGAWLIRYSFE
RLDALNGYASGMPSPGYYQQVWERLEAGQPDPFTAVALDSLARFARQTREQDQADAVSTA
LVQAAAAQAMRLAALRGNAGPGRQDLLDAIRSCFIKGAIDEGTRGFTADLRNFLSGTRIG
DVPPSAGSPPLIEDARRLARQAGVRLDDSTARVARLDLYRKPSHRERSRFFHAMAYLDAG
LGTWLAGPDFLGNSRLHLLFEEWRAAWSPLVEARLIELAADGASVEAVCMARLQKEEDAL
CGQGRGRSASAAVALLLRACLVGLQSRLPQLLSMLSTHLDEDASLGSVVDCGHRLVTLWR
AREPLGVQQHPQLLGLLERVWPAALFLLPDAGACAEEGEAGAVKQMLSLRELGRLLASLQ
GEQGQARDDAIDLGLLRAQLERFASGAQAAPGVAGAASALLYLDGHWDEQALDTVVRQRF
GPGAQPREAVRFLNGVMAAAPELLLRLPALLEGLDGLVQAWDAEAFIAHLPDLRQAFTRL
KPQETSDLAGRVAALHGMNEAEGGALDQMHYDTTEQDMLEGAQLQLALAECLRRDGLAGW
LGAAQDKKNTENAS