Protein Info for ABID97_RS03805 in Variovorax sp. OAS795

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 transmembrane" amino acids 10 to 32 (23 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details PF00672: HAMP" amino acids 128 to 178 (51 residues), 37.3 bits, see alignment 4.2e-13 PF00512: HisKA" amino acids 186 to 243 (58 residues), 42.6 bits, see alignment E=7.7e-15 PF02518: HATPase_c" amino acids 287 to 394 (108 residues), 94.6 bits, see alignment E=8e-31

Best Hits

KEGG orthology group: None (inferred from 93% identity to vap:Vapar_0258)

Predicted SEED Role

"Copper sensory histidine kinase CpxA" in subsystem Orphan regulatory proteins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>ABID97_RS03805 ATP-binding protein (Variovorax sp. OAS795)
MLNLYSRHLYFRIWLAVVGGVVILTLMANWIVREAAQAERERLAPVPRNVVVLDAQDRTI
GTGQALRVPGQGLEFDVTLSDGKAITLRVAPRDRPSGTGGFAPWRTPFGLGWMIALVGIA
VGLGVYPIVRRLTQRLETLQRGVQRWGEGDLSVRVIEEGQDEVADLSKRFNASAERIEKL
VRSHKSLLANASHELRSPLTRIRMGLELMGERPSPAARDEISRNIGELDQLIDEILLASR
LDASEADMGTIEAVDLTGLAAEECSQVNADLDLEEGTDNAKLTVPGVSRLLRRAIRNLLE
NARRYGAGEISVELGSANGFATVRVNDRGPGVPAALRDRIFEPFYRLPGASERNGGVGLG
LALVKSIAERHGGSVRCEERPGGGASFVIRLPVAGRAS