Protein Info for ABID97_RS02485 in Variovorax sp. OAS795

Annotation: FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 537 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13450: NAD_binding_8" amino acids 63 to 132 (70 residues), 45.9 bits, see alignment E=8.5e-16 PF01593: Amino_oxidase" amino acids 68 to 428 (361 residues), 60.9 bits, see alignment E=2.3e-20

Best Hits

KEGG orthology group: None (inferred from 86% identity to vap:Vapar_5265)

Predicted SEED Role

"FIG00456554: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (537 amino acids)

>ABID97_RS02485 FAD-dependent oxidoreductase (Variovorax sp. OAS795)
MQRRDFLGVAGATGALALAGCEAPVPPIEGGFTGIDVARGHAMRDGLLKSQAPSAVKRTR
VVIAGGGVAGLAAARALRLSGIEDFALLELEDTPGGNARGGMVNGIACPLGAHYLPVPND
DAPEVQDLLEELGLRRRVAGRWEYDERHLCHSPQERLFFRGEWQEGLLPVHDVGDSTHAQ
YRKFAERIDAQQHAAHFAIPTLRVAPTPELLALDALPFERWLDDEGFSDVQLRWYLDYCC
RDDYGAGIEQVSAWAGIHYFASRHGFHAPGDAKGGSADSTPERDGVLTWPEGNGWLTRRL
ATPLGDRLRTGQVVTRIAELRGGVEVDAWDVASRSVVRWQAERCIVALPVFVAARVVENP
PSVLASAAAHVRYAPWLVANVHLRGPLADRAGAAPSWDNVVFGTRGLGYVDARHQSLDPT
PRGTVLSWYRPLGPSRHDGADGRRLLLERPWTGWRDDLLAELSVPHPDLPALATRIEVTR
YGHAMAIPTPGLLARIGAAQGGRVAAGRLSFAHADWSGYSIFEEAFTRGHVAGMGAA