Protein Info for ABID97_RS02155 in Variovorax sp. OAS795

Annotation: glycosyltransferase family 4 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 PF13579: Glyco_trans_4_4" amino acids 16 to 201 (186 residues), 78.2 bits, see alignment E=2.3e-25 PF13439: Glyco_transf_4" amino acids 16 to 205 (190 residues), 64.6 bits, see alignment E=3e-21 PF00534: Glycos_transf_1" amino acids 223 to 387 (165 residues), 41.6 bits, see alignment E=2.5e-14 PF13692: Glyco_trans_1_4" amino acids 232 to 368 (137 residues), 38.4 bits, see alignment E=3.7e-13

Best Hits

KEGG orthology group: None (inferred from 48% identity to xne:XNC1_0134)

Predicted SEED Role

"capsular polysaccharide biosynthesis protein" in subsystem Rhamnose containing glycans

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (408 amino acids)

>ABID97_RS02155 glycosyltransferase family 4 protein (Variovorax sp. OAS795)
MKILLINHYAGSLRHGMEYRPHYLAREWVRSGHTVRIVAASQSHVRSIQPEFVGRRHQEN
VDGVDYLWYRTPSYRGNGVGRALNIATFCTQLMWDAKRLAREFKPDVVVASSTYPMDIWP
AHRIARLCSAKLVHEVHDLWPLSPMELNGMSARHPFIAVCQMAEDFACKRSNAVVSMLPK
VQDHMAAHGLDLSKLHIVPNGVSTEEWDNVNETFAPEIAQHIQKAQSEGRLVVAYAGAHG
LANALDSLLDAAAILLSEPFSFVLIGGGPERERLKRRVASEGLHNVAMFGPIPKGQISPM
LAAVDVAYIGLQSVPLFRFGIAPNKLMDYMMAGCVVLSAIEAGNDPVAEAGCGVSVQAES
APDIAQGLRIIASIDPDVRRQMGLRGRSYVQEHHTWPVLAKRFIEAVS