Protein Info for ABID97_RS02125 in Variovorax sp. OAS795

Annotation: PilC/PilY family type IV pilus protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1463 signal peptide" amino acids 1 to 55 (55 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 915 to 1272 (358 residues), 110.6 bits, see alignment E=4.6e-36

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1463 amino acids)

>ABID97_RS02125 PilC/PilY family type IV pilus protein (Variovorax sp. OAS795)
MNKHQKSPLRAFASQASRTWEFAIHPRLWSSRQRSALWFALPLAALAISFVVNSQTSAPA
FKAISLSSDPLYATTSGDKPTLALALSVEFPTVGAQYTPGGADDNTYSNTNEYLGYYDAE
SCYAYNNAPTETPATGFTAADYKRFDRVGRATSRTCADAYPNAFSGNFLNWAGNSAIDML
RLALSGGDRYIDTTDLTILQRAVIPNGDPVCMWNSTNFPAKRLLRAGGASGKAFWGAVPA
AMIAAAGNNDIFVGNTLNRMYFGTARGGGCGDTGSYSLGNPPPAAAIGPIDDKKNPPNDL
TFCANEGQTCSFTGVKEVWYGADKKWKVAPANLSTACSNAVFGDPINGSAKACYTRAYSG
SWTAPAGGDGFFYARVQVCQKDSAGNLLDTRDYPFCTKYPSGNFKPGGVVQKYSDQLRLA
AFGYLLEQTASYDGGRYGGVLRAPMKYVGAKTFDIYGQDSTPASGNANAEWDATTGVFKA
NPDAHAMGISGVVNYLNKFGRTGTPGKYKKYDPVSELYYETLRYMQGLGPSPDAITGITD
TLRDGFPVYTDWTNLDPFGGGRTNTGAYACLKNNIVVIGDINTHDGSRFPAANAAGNIPN
LGTWTGVVQDFEKGVVRSYTDGAGTTRQTSNPNAVNTNPKGDAIIGYSYWAHTHDIRGAG
WTDEPAKQRPGLRVKTFIFDVNEYGDQNNANTRRTRNQFFTASKYGGFESDSSNLGSKPF
NTYGNPFRKEDGTANNDVWQDPDHPGEAGTYYLQSSARGVLSAFDSIFSRASTTARSIAG
TAVASQKLTADNKIYQGSFDTSNWSGDLQAFGVSADTNGNVSISSTATWSASDRLAALSA
PATSRNIVIGNAGATAATTATAFTWSAISTEMKAHLNKPSPAAAADTQGEARLNYLRGSS
ASEGTTFRRRNNKLLGDIINSGVAYSGAPPSTISSTTYAAFRQDNLSRTAAVFVGANDGM
LHAFNAGTGDELFGYIPSWLGPKLSALASPTYVSDHQSYVDASPAVAEAQVGSAGTKADW
KTVLVSGTGAGGRGVFALDVTNPAAFDATKVMWEFTNADDADLGFVVGKPQILKMRTSAA
GAAATYKWFALVASGVNNYVRDSAGVFSSTGRPALFILDLAKPAATAWTLGSNYYKVSLP
VDTTLAQTVAPGVINFSAVPGAEREVTQVFAGDLHGKVWKLDFRPFGVSNWNIDKLSAFN
KGTDASPVPYPLFIAKDSTGKVQPISMAPALIAGKRGNSTYVAFGTGKYLEADDRSSTPQ
NTFYAVHDNGSTTPDASPAGASVISGRARLQAGTVDTTARTVAIAPFVWGRATSDADATQ
RSGWYFDYATSGEKQISNALLNGQTLIFGSLIPGSTGGASACGVSGGSGNEYRLDVDTGD
GDYRVSTVGILGQPLVIELASSTETVSNSTGRRTRTITSQVIKQGSGGIDTASGSGDKTT
KTIVAGRLSWRQINNYQDLKNAP