Protein Info for ABID97_RS02105 in Variovorax sp. OAS795

Annotation: Wzy polymerase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 578 transmembrane" amino acids 20 to 36 (17 residues), see Phobius details amino acids 42 to 61 (20 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 173 to 190 (18 residues), see Phobius details amino acids 197 to 214 (18 residues), see Phobius details amino acids 220 to 236 (17 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 350 to 372 (23 residues), see Phobius details amino acids 382 to 399 (18 residues), see Phobius details amino acids 404 to 421 (18 residues), see Phobius details amino acids 442 to 461 (20 residues), see Phobius details PF15864: PglL_A" amino acids 164 to 189 (26 residues), 44.5 bits, see alignment (E = 1.5e-15) PF04932: Wzy_C" amino acids 203 to 362 (160 residues), 70.4 bits, see alignment E=2.2e-23 PF11846: Wzy_C_2" amino acids 385 to 568 (184 residues), 159.3 bits, see alignment E=1.7e-50

Best Hits

KEGG orthology group: None (inferred from 70% identity to vpe:Varpa_5899)

Predicted SEED Role

"Lipid A core - O-antigen ligase and related enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (578 amino acids)

>ABID97_RS02105 Wzy polymerase domain-containing protein (Variovorax sp. OAS795)
MTSRAAPLEVAVLPSKTIGAVRAGLVAFPFLCPLVAGPSVQAWQLLATWVCLAAMLLAMA
PGAPARGVWLWLAGGMAAIALSSCFSFFHAGLASWLPAAGVLGAMAAAACVGAGMARGGP
SSAAPLAMGILVAGLVSAVLGLLQYYGMAEPLVPWTTTPALGQAYGNLRQRNQFATLISM
ALVAALWLHAMQPSVRVRRWLVAAALLLLVAAAASTSRTGLLQLLSIVGVGALIAWRERR
GKADGANAARFSLPPPWALLAMVPVYFAIAWVLPQLAAGEVEGMMQRLQEGAPGDHTRLI
LWRNVLTLIGQHPLAGWGWGELSFAHYSTLYDGPRFPEILDNAHNLPLHLAVELGIPVSV
MVCGGFIWMVLAARPWRELDPARLMAWGMLGAIALHSLLEYPLWYGPFQLAFGLCMGLLW
PSRRSAPSPLRQRFNGRWREPAVLSSVAAAVLTAVVGYAAWDYIRISQIYLPRDERLPAY
EENTLAKAKASWLFARQVGFAELTLKAVTPANAAAMHALAERTVHFSPEPRVIVKLIESA
ELMGQRQEARDQAERLRIAFPDAYERWLKGQPLDAERP