Protein Info for ABID97_RS02020 in Variovorax sp. OAS795

Annotation: septal ring lytic transglycosylase RlpA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF03330: DPBB_1" amino acids 92 to 179 (88 residues), 90.7 bits, see alignment E=6e-30 TIGR00413: rare lipoprotein A" amino acids 94 to 185 (92 residues), 135.2 bits, see alignment E=1.5e-43 PF05036: SPOR" amino acids 267 to 341 (75 residues), 46.1 bits, see alignment E=4.9e-16

Best Hits

Predicted SEED Role

"Rare lipoprotein A precursor" in subsystem Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (344 amino acids)

>ABID97_RS02020 septal ring lytic transglycosylase RlpA family protein (Variovorax sp. OAS795)
MADGARTRAASAWAACALAAAVLLAGCASGPRGSGASGGRDGAGSNIPADLDRVPDAEPR
VEPIRNGGGTSKPYTVLGRAYQPITDDRPFRESGIASWYGRKFHSASTASGEPYDMYAMT
AAHKTLPLPSYVRVRNPANGREVIVRVNDRGPFVDGRVIDLSYTAALKLDLLRGVAPVEI
ERITNEDIRTGAWRRDSGTAYASTMPVAPQTAMAPAAPPTTPTAQPAPDAPSPRPAIEVA
ELPPMAPANPPASAARSTASPSFAAATAGFWVQLGAFRERDGAENLMSEAARGLPTLAPQ
LRVFSEAGTHRLQAGPFPSRSAAGEAVAQLRESLRIAPMVVERR