Protein Info for ABI39_RS21010 in Phocaeicola dorei CL03T12C01

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1015 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 336 to 355 (20 residues), see Phobius details amino acids 362 to 384 (23 residues), see Phobius details amino acids 390 to 413 (24 residues), see Phobius details amino acids 434 to 453 (20 residues), see Phobius details amino acids 464 to 487 (24 residues), see Phobius details amino acids 524 to 544 (21 residues), see Phobius details amino acids 857 to 877 (21 residues), see Phobius details amino acids 884 to 904 (21 residues), see Phobius details amino acids 910 to 931 (22 residues), see Phobius details amino acids 956 to 975 (20 residues), see Phobius details amino acids 980 to 1009 (30 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1008 (1003 residues), 522.8 bits, see alignment E=1.7e-160 PF02355: SecD_SecF" amino acids 840 to 1000 (161 residues), 28.1 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_4077)

Predicted SEED Role

"AcrB/D/F family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1015 amino acids)

>ABI39_RS21010 efflux RND transporter permease subunit (Phocaeicola dorei CL03T12C01)
MNIPKYSLENRKVIYFFLAILLIGGVISFFKLPKKEDAPFVIKTAVLVTQYPGANPHEVE
KLITEPIEREIQSMTDVYQIKSESYFGLSKISIELQPTIDPDYMPVKWDELRRKVANIQP
KLPSGASTITVNDDFGDVYGIYYALTADEGFSYTDLRDWAQRIRTQLTPIEGVQKVMLYG
EQTEVINVKISTSKLSALGIDPTSIMGILQKQNIQVNTGDIATEIYQLRLRTEGTYTSLE
DIENQLIISKDGREVRLGDIATVERGYYDPPSTLMRVNGKRAIGIGVASGAKDNVVAVGK
AVDERLAEIEQLLPIGIELASLYPEDKIADEANNGFILNLIESLVIVILIIFVVMGSRAG
MLIGSSLLFSVGGTLLIMLMWGVGLNRTSLAAFIIAMGMLVDNAIVVTDNAQIGIKRGKS
RYQSLIEGAIKPQWALLGATFIAICSFLPLYLAPASVAEIVKPLFVVLAVSLGLSWILAL
CQTTTFGNFILKEAVPGGAMKDPYDTKLYHKFEKFLTLLIKRRFVTLTTVFVTLVLSLVI
MAVMPQSFFPKMNKPYFRADLVFPEGFSIHAVDQDVMKVEGYLKNHEKVKSYSVTLGGTP
LRYYLASSSFGPKSNYANVMVETKDPEDAAEVEQQFYEHMTQNFPNIITRSALFALSPVP
EAAIEIGFIGENPDTLTALVERAKKIARQCDMVTDIRSNWGDKVPVWKPMFSQQKGLRLG
ITRQQVANSFRTATNGLPLGEYREGDVSLPILLKDEDVEKMNLNDVKSVPVFSTKGNSVK
VEQVIDNFALGYDYNVVRRFNRERCMMMQCEPKRGANTMAAFKQVLTAVQEQMRLPEGYK
MKYFGEQETQDVSNAALAKNIPLTFLLIYVVLLFLFPSNYRKPVLIMLMLPLVFIGVVWG
LLLFGKSLDFFAILGLLGLIGMNIKNAIVLVDEIGLQLKDGKGAVPAVVEATKTRIVPVT
MASGTTILGMLPLLGDAMFAGMAATIMGGLFVSTVLTIFVLPVTYCIFFKIRADR