Protein Info for ABI39_RS20985 in Phocaeicola dorei CL03T12C01

Annotation: PD40 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1086 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF07676: PD40" amino acids 30 to 45 (16 residues), 11.7 bits, see alignment (E = 4.4e-05) amino acids 58 to 91 (34 residues), 44 bits, see alignment (E = 3.1e-15) amino acids 213 to 244 (32 residues), 22.8 bits, see alignment (E = 1.4e-08) amino acids 348 to 383 (36 residues), 32.3 bits, see alignment (E = 1.4e-11) PF14684: Tricorn_C1" amino acids 712 to 778 (67 residues), 93.7 bits, see alignment 1.1e-30 PF03572: Peptidase_S41" amino acids 901 to 1056 (156 residues), 72 bits, see alignment E=9.1e-24

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_4071)

Predicted SEED Role

"putative Tricorn-like protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1086 amino acids)

>ABI39_RS20985 PD40 domain-containing protein (Phocaeicola dorei CL03T12C01)
MKRQLLGVAAILLSISTYAQDNPLWMRYCAISPDGTTIAFTYKGDIYTVPSTGGRASQIT
TNPAHDTKPIWSPDGKKIAFASDRMGSMDIFEVNKEGGIPKRLTTHSGNETPVAYKDAGH
ILFLANIMPTVEDAQFPSGQFQQVYEVNTEGGRPALFSSMPMEDISINHTGNTLLYHDKK
GYEDPWRKHHTSSITRDIWLCSLNGNRTFRKQTTFNGEDRTPVWASDDKSFYYLSEEKGS
FNIFKRDIDGNTSKQITNHTKHPVRFLSAASNGTLCYGYDGEIYTVKEGAIPQKVQISIV
TDKNDKDLIRQIKRSGATEISLSPDAKEIAFVLRGDVYVTSTEYSTTKQITNTPQQERDI
HFSPDGRSIVYASERNGLWQIYQTSLAKKEEKQFAYATDIKEERLTNSDITSFQPQYSPD
GKEVAFLENRTTIRVLNLKSKAVRTVMDGNYEYSYSDGDQWYQWSPDSKWILTNYIGIGG
WNNKDVALVNASGNGEIHNLTESGYSDGNAKWVLDGKAMIWESDRAGFRSHGSWGAEADI
YIMFFDLDAYDRFRMSKEELALLEESEKKDKEKSEEKKKADNKKDKKKDSKKEDDKKEVK
PLVFDLENSRDRVIRLTVNSSRLGDAVLTPKGDKLYYQAAFESGYDLWEHDLKENKTKIV
MKKVGGGALLPDKKGENLFLCSQGGIKKVTVSSGETKPVEFEAFFDYQPYGEREYIFDHV
WQQVEDKFYVKDLHGVDWKGYHEAYARFLPYINNNYDFQEMLSEMLGELNGSHTGARYYS
NGPTLSTATLGAFYDETYDGDGLKIKEILAKGPFAVKKTDVTPGCIIEKIDGKPIVKGQD
YFPLLEGKAGRKVLLAIYNPATGKRFDITIKAISTGEQSNLLYKRWVERCRNIVDKLSEG
RIGYVHVKGMDSQSFREVYSEVLGRCRNKEAIIVDTRHNGGGWLHDDLATLLSGKEYQRF
VPRGQYIGSDPFNKWLKPSCVLVCEDNYSNAHGFPWVYKELKIGKLIGAPVPGTMTAVWW
ENQIDPSIVFGIPQVGCMDMRGQYAENHQLSPDIEVYNTPEKALAGEDQQLEAAVQEMLK
TIGEKK