Protein Info for ABI39_RS20325 in Phocaeicola dorei CL03T12C01

Annotation: flippase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 9 to 30 (22 residues), see Phobius details amino acids 44 to 65 (22 residues), see Phobius details amino acids 85 to 108 (24 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 292 to 317 (26 residues), see Phobius details amino acids 325 to 351 (27 residues), see Phobius details amino acids 358 to 381 (24 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details amino acids 419 to 439 (21 residues), see Phobius details amino acids 445 to 473 (29 residues), see Phobius details PF01943: Polysacc_synt" amino acids 11 to 274 (264 residues), 109.2 bits, see alignment E=3.9e-35 PF03023: MurJ" amino acids 105 to 434 (330 residues), 33.3 bits, see alignment E=3.3e-12 PF14667: Polysacc_synt_C" amino acids 330 to 465 (136 residues), 78.4 bits, see alignment E=9.1e-26

Best Hits

KEGG orthology group: None (inferred from 59% identity to bsa:Bacsa_1210)

Predicted SEED Role

"Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (485 amino acids)

>ABI39_RS20325 flippase (Phocaeicola dorei CL03T12C01)
MAKSVKANYLFNLINSASQLLFPLITFPYASRIMMADGIGQVNFFQSIISYISLFTCLGI
PMYAIREVAKVRDNPEKMTRITVEILLLHAFLTLLGYMAVAVICLTVTKVQTDIPLFLLL
SATIFFTAIGCEWFYQGIEDFKYVAIRGMVVKTISVILLFLLVKSKEDILWYGAYSVLGV
LGGNIFNFVRLRKYLHKDMIEFRALHPFSHLKPAIHIFAFNVIVSIYLQLNNVLLGFMKD
AEAVGYFTAATKILVITMSLSSSLGAVIMPRTSNLIAENKMDEFKVLIQKSYDFILALAT
PLTVGLIFTSPSVILLLSGESFAPAILTSQIVALNILMVGISGVMGLQVLYPMGRINIVI
LCTFIGAVVNVVLNVLLIPVYGHNGTAVAYMLAEVAVTVSMFIVGRRYIPIQFFKKQHFH
YIGGGIVMGGFLYFISLLGLSNIYTLITMICVGIMVYIIVLLWLKDSIGMVILSIIWRKM
KCRFQ