Protein Info for ABI39_RS20065 in Phocaeicola dorei CL03T12C01

Annotation: LruC domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 625 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details TIGR04456: LruC domain" amino acids 399 to 620 (222 residues), 197.9 bits, see alignment E=1.6e-62 PF16130: DUF4842" amino acids 432 to 620 (189 residues), 168 bits, see alignment E=3.5e-53

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_3882)

Predicted SEED Role

"FIG00403961: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (625 amino acids)

>ABI39_RS20065 LruC domain-containing protein (Phocaeicola dorei CL03T12C01)
MKTKFWIICLSVFFVSCLRNMHDIYTGGGEEGEEKINKDDFFDFTTVRNSQLIIDYGMKV
QTAFYLYDEYPMELVENTWEFKDINPIYAASTDMNGRFFSKVSLPAYLKKVWLVTDNVLV
VSPVELELLSDGLTFNYVDYKAQLSADGRSRAVMGGVSYPDGYDVLGNWNENGVPDYLLP
EKLDIPGAFLERCSNLSRSIVVDNRNLLERFPELRTSGSNDMVITKSTGLVATYFNFSST
TWEDMVAYYTYKEGESVDMATIKKTILIPRSSRNAPKSLVGEQIKLKYWNKEQSKYEDEF
PQGTHIGWILLGMGFGKEKGVFPRYSNPAYNDNKEQRSVLLSDPELDNCFFMAMEDNVDM
RFNDVQFAIMASASSSVEPTPNIPDEVNKGEISYVVKGSLAYEDNWPDKNDYDMNDVVIY
YSSTVVKDKSSNALVRTTTTFTPMNDGATYTNGFGFQLDYVGKEHIDLVQVSQEGNVIGK
NFEPGIEKPVLILFSDIKPVLKKPVTVVIGFKKYDKVSDMDAYPPYNSFIFVNKRSHEVH
LSGYKPTSVADESLRGTGSDLSQDSNGSPMYYIAEDNMPFAINISNSEFRWPSEKVSITT
YYPEFKQWRDSFGADYKDWYLHPKE