Protein Info for ABI39_RS19960 in Phocaeicola dorei CL03T12C01

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 299 to 316 (18 residues), see Phobius details amino acids 321 to 340 (20 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 50 to 266 (217 residues), 38.7 bits, see alignment E=1.1e-13 PF00535: Glycos_transf_2" amino acids 53 to 216 (164 residues), 33.9 bits, see alignment E=3.2e-12

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_3860)

Predicted SEED Role

"Glycosyl transferase, family 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>ABI39_RS19960 glycosyltransferase (Phocaeicola dorei CL03T12C01)
MELFTIDTILPIASGALFITQAVYYLGLYNKLYTHSRETAYATDINTQNPPLSVIIVAKD
ATHELQENLPFILEQNYPEFEVIVIYDRPADDCDNTLKLLEDKYPNLYHTFIPDSARYIS
HKKLGITMGIKASRHEWLVFTEPDCRPQSNQWLKQMARNFTPATEIVLGYSNYEKVPGWF
NKKITFDTLLNSMRYLGMAVSGHPYMGTGRNMAYRKTLYYKQKGFASHLNLQRGEDDLFI
NETARAHNTRVEASPESLMRIAMPKYKRIWCEEKISYAATSRLFHGTARYLMGFETCSRF
LFYTAIIATITISILLHQWTIAAIAVLLWLARFTMQLIVFRKTAKVFGERKFCALLPLFD
FLQPAWNGVFKLQRKFRRKNEFMRK