Protein Info for ABI39_RS19700 in Phocaeicola dorei CL03T12C01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1824 transmembrane" amino acids 545 to 563 (19 residues), see Phobius details PF20155: TMP_3" amino acids 183 to 373 (191 residues), 58.7 bits, see alignment E=3.4e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1824 amino acids)

>ABI39_RS19700 hypothetical protein (Phocaeicola dorei CL03T12C01)
MADLGNLYFDILFRDKTAEQRKKLKAEITKDLQAKLDVGFDKKKLVGDMKTLLQSEKFKI
NVVVDKASTTQAVRAALQAAGLNTNFTASDLRAAKAAAIQTKAEASAAAARELARQRAAR
AAKAELDLANARERSANAARRHMTATLNMNGAMNSQLSIVGQLRNEFLGLYSIYAAQNFL
RAVVDIGGELENQKIAMASILQDEGKATTIFNQIKKLAVASPFGVMDLNQYAKQLSAYSI
PYNELYDTMKRLADISAGVGVDMGRIILAFGQIKAAKFLKGTELRQLTEANIPMVDKLAE
RFSKLEGRIVSAGEVLDMISKKKVTFEDVKDVLWELTDDGGMFHNMQEVLSESVKSKWKN
LADAIDIMLGDIAESMGSTLKWTAESLTTLAQNWKEVVPFITAATAAFGTYRVAVYAGSR
AMGVANATLIKGTLAAKQKTAADLVMASNYRTLTAAEKGLIASRNAMTTAEWRALAVSGA
LNKEQALRLITLGKIKSGQAGHITQLLNISKAELQVAMSAGKARVAMAMLSYGAKQVWTA
FKGLFNPYMYLFAGLFAITELWYKSGQKADEMNERISELTTRAQDGFKNLTKEAQKFADV
DPFKANDASLISSIEEMKTALKDYSPVWADTFNETFKTDDEGNTVKSLAEQYILLRNALN
DTKEAYRLLNAIKGTSEHANEATDGYFDDSFLENINDYIDAEERVNKIIGRMSGSYIEYS
TAMQKVIAKHGDFAKAASGKPLKEQLSILKEYPKALASLNNELPFTGGYRDDIFQLRKAW
KNSKRIYMEDVLPDMKDFLSGYKSRLKAAGWDLENLSDAQKIAIGLGISSFFDTFEKMPK
YMRDFFNEKTLEEEFNIKINAEYTEASQSFSDLQKKFNEATDGQFEAQIKVSTDSEKIIE
GIQKGYKEAKEKTNQLKPVLIKAGIDLSDIGAIDLSKLPDRQKQIVSDYKKAFDTMQAGE
KGAKEIGFSLTDPNKDKSKKDAFAERLKERVNLLKEAYSEYKKWTDIVGKGEAASKVKES
GIFDSLFKGKEPVNIVNYRDELNKILNQLDDKTKERRELKVSIRKVLLDIDANAMKEASD
KATKELERYVSDVSKKWDIYKQLINAGASKKDASTYAFGFLTDYENEAQYLIDTVQKKLK
EKAVDLPFTLSDDEAESILGGKDSPLYKQFFKVWKDAKEAFEKDKVSIALDDTKVIANAR
STIEKIRILSEQYASKTGLSVGKNGELVGDTSGLNNVQKAYLDEYNKKLIELKSTLLQLL
PEWEKIFGDKEQRSFSDLKEAERIAREIKNNAKVSYDSDGKPNGFTSFFTKDDGSIENVK
GAYSLLDKLIKAIPQLQDAQLAVNPFKTLAKNVKELFTSEKDSDKLEKKIGRLGESAAES
ADLVGNFAGQMSSMFDALGNEGMADTMGNVQDAMSSISNIGQGFAKGGIVGGIAAAAGEA
VNWIGKIAQAHDKKLDKAIEKSKLRAQQLQYIYEQIDGILERFLGSGTELKLVDAENDRT
RLNQLNNQIEAIRNKGKINIFDLMSLQKYKQEAEKLQKRVSAYDEGGAYGYQRALMQEQL
SELEKQRQAEIDKKKTDDSKVADYENQIAEMKQQIKDFAEETAESLYGINLKDWASQLGD
ALYKAWQKGEDGAEAFKNKVADIMGDVMNSILKISILEPAMQQLQKMLFGEDGMSGYFGK
DFSLDERELESIADYLMGVSEKTDDYYSMLDKLNNYMEKKYGISMKEEEEDSGSGLSKGI
QNVTENTANLLASYINAIRADVSVKREYVRRLVEELFPAYNVIAQAQLQQLTMIQINTAK
NVEFVEEIRDILHRNINGVNKFNV