Protein Info for ABI39_RS18850 in Phocaeicola dorei CL03T12C01
Annotation: twin-arginine translocase TatA/TatE family subunit
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 54% identical to TATA_CHLL7: Sec-independent protein translocase protein TatA (tatA) from Chlorobium luteolum (strain DSM 273 / 2530)
KEGG orthology group: K03116, sec-independent protein translocase protein TatA (inferred from 67% identity to bsa:Bacsa_2581)Predicted SEED Role
"Twin-arginine translocation protein TatA" in subsystem Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related or Twin-arginine translocation system
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (67 amino acids)
>ABI39_RS18850 twin-arginine translocase TatA/TatE family subunit (Phocaeicola dorei CL03T12C01) MTGTLLFLGLGMQEVLFIALIVLLFFGGKKIPELMKGLGKGVKSFKEGMNGLEDDIDGKD KKGETKK