Protein Info for ABI39_RS18480 in Phocaeicola dorei CL03T12C01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1363 transmembrane" amino acids 63 to 81 (19 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1363 amino acids)

>ABI39_RS18480 hypothetical protein (Phocaeicola dorei CL03T12C01)
MRLKDQQIIKQIIEKIRCTNDSLTVTTSQVQEAVNLCNFPQWLKTILLWIAAITLRKRGM
FSFLKAYIVICSTYIITRPSIWEAVINSFFTSNVKVRNILLTIVQIFDGAVDKMIFGTLT
VVVIIVVTYHFIIKYQENKVHNELKTLIDEITFKPEKKWFDKKCNIAISTLGNRYSSEIN
YKNPHLSTVYKALVTPDKWILSFRKSLQTFIKESKHLYDKLPSPIKEQNVCIHNNISYII
DIYNNKQYNKFAILFNNIRSIFQQFRTISNRNRDEFPNYKISSLEESFRNIESNASIYKF
FSKPVLYVKGDAGSGKSHFLADIVNTRMEHHLKSLFALGLQFNQIEDIRDRLMNIWCVKG
SWDDFLDKLNKIGEIEKHRILIIIDGINEGLGNHLWPNVLAGIEADILQYPNLGLIISAR
TFSNTNMLDEISKDKATITMEGFQGMEDEAIKYMTGKFGVTFPQISNFRKEFANPLFLKL
YCQAYSSSTATMPKSFLDVIKHYLGKVNEKLASKYNYQAALYNYTQQVANVLTELYALQK
TTKMVKFHKLDDVLKEVKNILPNNIVHSYLQELVSDGVLISYIDKQGEILIDFNFDLVGD
YMYAAALIDKQWKEYIGRIFDNGIYEATCVLLPLMKGIEITNYHISNISYEHRLQLFIDT
LKQRFSISLDAIIEIEKIKNIDLDLFYEILPVLATHSECHSIIGMVNNELKGMSMVERDQ
KWSMHFTINHHNPSRTELVKFSKWAASISRKSASIMPDIVAKQAACILMWSFSSPYRLLR
DVATKATINLLQDKPNVLIDLVDFFDDVNDPYIQQRLYAVVHGCVYRGKCCESVELGKKV
FEAVFNTPIVRPDILLRDYARCAIDFINQCTPIDGINIKKIEPPYGVNFNFNQCPKRETV
ESKYHLDETMGFDKKTVFTQNKILSSMETEYSNGVCGYGDFGRYTFEAYLRSWEDCEGYS
ASLLRNYALDIIFEKYKFNANVYKQHDYIINKLYRGNRPVMERFGKKFQWIALYEILGLL
QDNYKMELWESNNKNVQCNGTWDPNVRDIDTTNTFFNYYNEDNLIPKYEPLEWTHVNNIP
FKVKHKEKWLTSNEGMSKELVSKSIIVKDDKGEEWIVLYGYNTITSESSTLTIDEDEIGL
WEFIQAYTVHRKNRNNVAKLIHKKGTQSRDMPEYRNDIYCLFYKDYYRSASYREYAKRTM
MDDWKEFNSPKTLYQIGYRPYSFEGEMSAYRLNKLLYSILNLKDGEKEGEYIDINGKVVA
FDPSVKFESGSQLLVRKKELLIALKQHKLSLVWPLLFEKQIGTTVIGCQFGGSAWITDNG
KIKVKMRLYDESRFKSNKDTCCKVLKNYAKFILSTVRHCPKLY