Protein Info for ABI39_RS18185 in Phocaeicola dorei CL03T12C01

Annotation: DUF3857 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF12969: DUF3857" amino acids 40 to 208 (169 residues), 152.4 bits, see alignment E=1.2e-48 PF12970: DUF3858" amino acids 400 to 514 (115 residues), 119.2 bits, see alignment E=1.1e-38

Best Hits

Predicted SEED Role

"FIG00898002: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (519 amino acids)

>ABI39_RS18185 DUF3857 domain-containing protein (Phocaeicola dorei CL03T12C01)
MKKIYYIYVCLGVLLLTALPAKAASEAEFGKLAKTYTLHKDGSQEMRVYKELTLFTHAAM
NGLYGESFIVYNPAYQELKIHESYTRQKDGKIVKTPENAFVEVLPAAAADAPAYNGLKEM
VVVHTGLELGATICLDYSVITRPGYLPGLDVYVPVEELSPVKEYICSVSVPEDKPLNYAL
INGKAAPVVKNENGSKVVTWTLKNIPAYYPMESTPALSGNIPVILANTYPSMADALKVLK
SQFTAAHEKEVMALAQKLLQGKNADEKEAVLMNYVHGLGTSRLSLSETGYRIRPATEVIR
TAYGTEAEKINLLAGLLQAAGLQGEVKVAFGVKAPDNCLGLGAISQLFLDSPVIAGIQEY
QPVNTLDGKKAVLEVKNKPVYETDTITVTSETGKTLAGGYRLITLPRAKTGIAMNGYGFG
NTERTTNLLLPGMTDETYICIVNVPSDMQVCTPQKAKEIVNAVGKLKITVQTTEDKTEVT
RSLRLNKQWITPTDYADFHRLMSEWEDSHHTTLLLKEKK