Protein Info for ABI39_RS18015 in Phocaeicola dorei CL03T12C01

Annotation: efflux transporter outer membrane subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR01845: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family" amino acids 46 to 483 (438 residues), 233 bits, see alignment E=3.2e-73 PF02321: OEP" amino acids 68 to 272 (205 residues), 68.1 bits, see alignment E=4.4e-23 amino acids 299 to 464 (166 residues), 57.9 bits, see alignment E=6.2e-20

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_3593)

Predicted SEED Role

"RND efflux system, outer membrane lipoprotein, NodT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (485 amino acids)

>ABI39_RS18015 efflux transporter outer membrane subunit (Phocaeicola dorei CL03T12C01)
MMKKMKNNNINKTGLIMGAFCLIMVSCKAPSLTPTEKIELPEFYMDRETDSTTISSLSWK
TFFPDTLLQSYIAEALNNNHTFLQTIERISVARSQVRVGKGALLPDLSLGIDGGVQRFGE
YTMDGVGNSTTNTPDLEKDKHIPDPYRNFNLGLNFQWEADIWGKLTDKKRSAVSRWMQSV
EAMRLARTLLISEVGTHYFELIGLDKQRYVLREAILTARDAYNLTNELMKEGEVTRLSVD
QFRSRRLKLEEMLLANEQQISEKERAIATLLGRLPFKVKRVSFETACSYEFPTDAGIPSQ
LLQYRPDIKAAELELLASKSDVSAARKAFFPSIVIGGNGGFNAFDLDKWFTAPASLVYNL
GAGITAPIFKQNTIRALWNDAKSQQRIALLGYHETVLKAYEEVLNLITASSQMHQRKELK
EEESRIHHRSIYNANEMFKVGFAGYLDVLSADERFLDCELERIALNVESCKLHIMLYRAL
GGGSN