Protein Info for ABI39_RS17845 in Phocaeicola dorei CL03T12C01

Annotation: AhpC/TSA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF14289: DUF4369" amino acids 24 to 115 (92 residues), 78.3 bits, see alignment E=1.6e-25 PF08534: Redoxin" amino acids 225 to 359 (135 residues), 76.8 bits, see alignment E=4.8e-25 PF00578: AhpC-TSA" amino acids 225 to 346 (122 residues), 87.8 bits, see alignment E=1.7e-28 PF13098: Thioredoxin_2" amino acids 250 to 347 (98 residues), 30.7 bits, see alignment E=1e-10 PF13905: Thioredoxin_8" amino acids 251 to 344 (94 residues), 71.3 bits, see alignment E=2.2e-23

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_3557)

Predicted SEED Role

"Thiol:disulfide interchange protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>ABI39_RS17845 AhpC/TSA family protein (Phocaeicola dorei CL03T12C01)
MKKLVYLLAAGSMAFVACQNSPSYKVTGSVEDITDGDTIYLQEYAGGDLVKLDSAIVKSG
TFVFTGKQDTAVNRYITYMKGNKRYFTDLFLENGNINVTLGKESKVSGTPNNDAYQKFKD
GFMALSKEMNEMYQKAQSDTSLTEEQVEAIMAEIEKKDSVGMDMVYQTIEANITNPVGVY
LLPSYAGAFELDKQKALVEKIPAALVNERINKLKAHIETSKKTAVGQKYIDFSMQTPEGE
TVSLSDFVSKNKYTLIDFWASWCGPCRKEMPNVVEAYKAFKDKGFGIVGVSLDENADKWK
EAITALNITWPQMSDLQGWNNAGAKLYGVNSIPATVLVDQEGTIVARNLRGDAIKSKLNE
LLK