Protein Info for ABI39_RS16610 in Phocaeicola dorei CL03T12C01

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1199 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 24 to 88 (65 residues), 38.9 bits, see alignment 1.4e-13 PF13715: CarbopepD_reg_2" amino acids 24 to 105 (82 residues), 71.5 bits, see alignment 7.4e-24 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 24 to 1198 (1175 residues), 722.1 bits, see alignment E=1.5e-220 PF07715: Plug" amino acids 113 to 220 (108 residues), 72.3 bits, see alignment E=6.6e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 196 to 226 (31 residues), 59.2 bits, see alignment (E = 2.6e-20)

Best Hits

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1199 amino acids)

>ABI39_RS16610 SusC/RagA family TonB-linked outer membrane protein (Phocaeicola dorei CL03T12C01)
MKKHLLFLLACLFLMTGTVMAKIVKGRVIDSSDKEPIVGASIFVKSTKQGTITDIEGHFS
LEIPDNVKTITVSFVGMTTREVAITPGEMTIELTAESQALDEVVVVAYGTQKKSSITGAI
TQVRNEELLKRPVTSVTSALEGSTPGITVTGNYGSPGSDPTVLIRGIGTVNGSTSPLYVI
DGVPYGGNISDLNMEDIETMSILKDAASAALYGNRASNGVILITTKKSKSERIQFNFKTN
QGWYERALPEYERTNPFQFMEVEYQNAANAFVHGGGDRTDKQAILNAVNSTLIPDRLYVN
IFNKPDDQLFTLDGKMAADASIIDGYAGDLDWFDQATRKGYRSEYQFSGSGATSKSDYYF
SLSYLDENGYMKDSGFDRLTGRMAVNIKPVKWLRAGMSINASHQKFQNTSNGVGDGSSSY
SNPFYFCRYMAPIYPVHSHYTETGTVYDNAGTPIQVNKGDYVLDGAGNPQWDGGSYIIYD
QNGNPQEVITRNQNRDRHVIWESELNDSRTIRNTLNGIGYLDLVLPYGFTATLKANVNTR
NSDYYKYENAVIGDARGTVSEDGSISGRNGALAKTLYTYKNWTLQEQLRWNMTYNDRHNI
EVLLGHENYSYRYDYTYTSKTNEAFPNRYALSNFSEMASISGYKTRYRTESYLARVQYGY
DNRYNIEASFRRDGSSRFAKESRWGNFGSLGANWVFSNEEFMKKYRWLNQGKLRASWGQV
GNDSGSGYYAYYGLYGSWTQNSKPAYVVSQNPARDLHWETGESWGAAVEGRLFNRLNLSV
EYFDKRNKDLIFSVYAPSSAGGTSTGSSTSTTDRNIGTISNRGWEISADFDIVKSKDWTV
SVSANLTTTKNKIVKLPEQNKKKTVYPIDPSGKLGQREDLPVGITSGSYLISEGKSRYDY
YTYHWAGVDEMDGQSLYEANLNDYYIVLPDGSQLGGKQKLNDEGELMWDANGNPVQGATE
LAPENYRLINGKYYVLKTTYAQKKWAGSALPTTYGSFSANIRWKNINISAMFTYSLGGKI
YDSPYSSLMTPGQSAGNYHVDLYNNAWRINDRSNAMITTYKNAYDDAYNAAIAAGQTTSE
ANYAGYYAANKAVDGNGRINPNTNPEINNLTSTDNNAGSDRWLVSRNYLCFKNLNISYTL
PKRWTAKVNLSTVRFLFSAENIHLWSARKGMNPMMGIGGGQSNYLVPARVFTFGINATI