Protein Info for ABI39_RS16135 in Phocaeicola dorei CL03T12C01

Annotation: site-specific integrase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 PF13495: Phage_int_SAM_4" amino acids 94 to 173 (80 residues), 58.7 bits, see alignment E=9.2e-20 PF00589: Phage_integrase" amino acids 191 to 352 (162 residues), 140.1 bits, see alignment E=9.9e-45

Best Hits

KEGG orthology group: None (inferred from 68% identity to bhl:Bache_0175)

Predicted SEED Role

"Integron integrase IntIPac" in subsystem Integrons

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>ABI39_RS16135 site-specific integrase (Phocaeicola dorei CL03T12C01)
MEIYTPKTKIKLSPVIRNGREFVEVTFGNDNDIRLSLSKEENVLLVGGRAYLPAEDFVLA
EFFDRYVKMAFIDYSAIKETAPRKEEDKRPPLPEGYLEKLQQVRYSDHTVRVYTSYFRDF
QQHFEGRKIETVTPGEINDYLLYLIHEKNISSCQQNQRINAIKFYYEKVLGQERRCYKVN
RAKREKTLPDVLSKEEIKKILDVTVTDLRFFCMFSILYSAGLRISELLELKPGDINESRS
LIRVRQGKGKKDRYTLLSRPLMKKLTEYNRLYKPKVWLFEHRPGEPFTESIVSKRLKAAA
REAGITKRIYPHLLRHSFATHLLEQGTDIKIVKELMGHNNIKTTERYVHIADTFKSNIKS
PLDDLLMEEDEV