Protein Info for ABI39_RS15645 in Phocaeicola dorei CL03T12C01

Annotation: putative transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 562 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 384 to 404 (21 residues), see Phobius details amino acids 411 to 430 (20 residues), see Phobius details amino acids 450 to 468 (19 residues), see Phobius details amino acids 478 to 497 (20 residues), see Phobius details amino acids 504 to 524 (21 residues), see Phobius details amino acids 538 to 561 (24 residues), see Phobius details PF06826: Asp-Al_Ex" amino acids 26 to 186 (161 residues), 139.7 bits, see alignment E=8.5e-45 amino acids 387 to 558 (172 residues), 153.5 bits, see alignment E=4.9e-49 TIGR01625: AspT/YidE/YbjL antiporter duplication domain" amino acids 31 to 175 (145 residues), 113.6 bits, see alignment E=3.7e-37 amino acids 391 to 545 (155 residues), 154.9 bits, see alignment E=7e-50 PF02080: TrkA_C" amino acids 313 to 373 (61 residues), 38.7 bits, see alignment E=7.4e-14

Best Hits

Swiss-Prot: 87% identical to Y2507_BACFR: Uncharacterized transporter BF2507 (BF2507) from Bacteroides fragilis (strain YCH46)

KEGG orthology group: K07085, putative transport protein (inferred from 99% identity to bvu:BVU_3112)

Predicted SEED Role

"Predicted cobalt transporter in Bacteroides_Porphyromonas" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (562 amino acids)

>ABI39_RS15645 putative transporter (Phocaeicola dorei CL03T12C01)
MELFRNLFEGYPNLWGGGVAHSVLILSLVIAFGIMLGKIKVAGISLGVTWILFVGIVFGH
FNLNLDEHLLHFLKEFGLILFVYSVGLQVGPGFFSAFKKGGFTLNLLAMMVVFLGVTITI
ILHFITGVPITTMVGILSGAVTNTPGLGAAQQANSDLNGIDAPEIALGYAVAYPLGVVGC
ILSLLALKYTLRINTKTEEADAERGLGHLQELTVRPISLEIRNEAVEGKTIKEIKPLVNR
DFVISRIRHCDGDKQTELVNSTTVFHMHDEILVIANPIDVEAITVFFGKQVNVEWDFQNK
QLISRKILITKPELNGKTLAQLKIRNNFGASITRVNRSGVALVATPNLQLQMGDRVKIVG
SELAVAHAEKILGNSMKRLNHPNLIPIFLGIALGCILGSTPFLFPGIPQPVKLGLAGGPL
IVSILISRFGPHYKLITYTTISANLMVREIGISLFLACVGLGAGKGFIETIINEGGYVWI
AYGAIITLLPLLIVGIIGRYVYKLNYYTLIGVLSGATTNPPALAYSNDLTSCDAPAVGYA
TVYPLTMFLRVLTAQILILALA