Protein Info for ABI39_RS15565 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 767 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 33 to 107 (75 residues), 52.5 bits, see alignment E=1e-17 PF13715: CarbopepD_reg_2" amino acids 34 to 120 (87 residues), 85.9 bits, see alignment E=3.1e-28 PF07715: Plug" amino acids 130 to 235 (106 residues), 76.2 bits, see alignment E=5.6e-25 PF00593: TonB_dep_Rec" amino acids 263 to 731 (469 residues), 108.8 bits, see alignment E=1.3e-34

Best Hits

KEGG orthology group: K02014, iron complex outermembrane recepter protein (inferred from 99% identity to bvu:BVU_3095)

Predicted SEED Role

"TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (767 amino acids)

>ABI39_RS15565 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKKYIFFLMGVVCFLLSSLAVHANELNKSDANIIGHVLDKSTKEHLSFISVSLKGTTIGT
MTDASGHYFLKNLPEGEFTMEVSAVGYKTVSRKVTLRKGKTLEENFEIEEDLIALDGVVV
SANRSETTRRMAPTLVNVMDVKVFENTNSSTLSQGLNFQPGVRVENNCQNCGFQQVRING
LDGPYTQILIDSRPIFSALAGVYGLEQIPANMIERVEVMRGGGSALFGSSAIAGTINIIT
KEPVRNSGQLTHTLTGIGGTSSWDNNTTLNASLVTDNHKAGLYIFGQNRERSGYDSDGDG
YTELPKLKNQTVGFRSFIKTSTYSKLTFEYHHLSEFRRGGNKLNRPPHEADIAEQLQHTI
NSGGAKFDYFSPDEKQRLSVYASAQHTGRDSYYGGGQDVNAYGATTDFTWVTGSQYIYSF
DKCFFMPADFTGGLEYNQDNLTDDMWGYNRYTKQEVRIASAFFQNEWKNKQWSFLLGGRL
DKHNMVDHVIFSPRANLRYNPTENMNLRASYSFGFRAPQAFDEDLHIENVGGTVSMIELA
KDLTEEKSQSLSISGDLYHRWGDFQGNLLIEGFYTLLSDVFALRQIGERDGIIINERYNE
KGAKVYGLTLEGKIAYRSLLQLQAGVTMQKAEYKQARAWSDDETVPMEKKMFRTPDTYGY
FTLSYNPFVPMTIALSGTYTGSMMVEHKAGFIDKDIAVNTPDFFELNLKAGYDFNLYKGI
TMQVNAGVHNIFNAYQSDFDRGAKRDSGYIYGPGMPRSYFAGVKLSF