Protein Info for ABI39_RS15355 in Phocaeicola dorei CL03T12C01

Annotation: DUF4373 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 24 to 42 (19 residues), see Phobius details PF14297: Lin1244_N" amino acids 7 to 89 (83 residues), 43.7 bits, see alignment E=1.9e-15

Best Hits

Predicted SEED Role

"FIG00412155: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (283 amino acids)

>ABI39_RS15355 DUF4373 domain-containing protein (Phocaeicola dorei CL03T12C01)
MDYTEQFIRLNCSLMSDYKMMKLNAEMKCMGIGLYIQMILFLRRQQEYKHDFNELDLLAE
QWGATVENLQHLIKDFNLFVITEDGYFRCLYLDEVMGYQNKLSEQRAAAGSKGGRSSKKK
TAQIAEKVITSTVLVAADKEADDEANNKENGAKCMKNTIEKSDDENIAENTIQYIDNECV
NECSQASVKQNFIREEKNREEKKKKDDVNIIQRNIDVDGKIAVVAELFRNIEFTPRWKRY
INEAFPVRTQAATARMMSVLEERGIGPPKKNYASYRLLRVIDH