Protein Info for ABI39_RS13530 in Phocaeicola dorei CL03T12C01

Annotation: beta-glycosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 946 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF02837: Glyco_hydro_2_N" amino acids 55 to 195 (141 residues), 52.8 bits, see alignment E=9.7e-18 PF00703: Glyco_hydro_2" amino acids 223 to 297 (75 residues), 55.5 bits, see alignment E=1.8e-18 PF02836: Glyco_hydro_2_C" amino acids 305 to 527 (223 residues), 110.7 bits, see alignment E=1.6e-35 PF02929: Bgal_small_N" amino acids 681 to 871 (191 residues), 31.9 bits, see alignment E=2.3e-11

Best Hits

KEGG orthology group: None (inferred from 97% identity to bvu:BVU_2695)

Predicted SEED Role

"Beta-galactosidase (EC 3.2.1.23)" in subsystem Galactosylceramide and Sulfatide metabolism or Lactose and Galactose Uptake and Utilization or Lactose utilization (EC 3.2.1.23)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.23

Use Curated BLAST to search for 3.2.1.23

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (946 amino acids)

>ABI39_RS13530 beta-glycosidase (Phocaeicola dorei CL03T12C01)
MKRTTTFLSLLALSAGLLAQSSVKTECQYLSGRGCDDMVQWDFMCTGGNNSGKWTKIGVP
SCWELQGFGTYQYGMKFYGKAFPEGVADEQGLYKYEFELPAEWNGKQIELVFEGSMTDTQ
VKINGRKAGSMHQGAFYRFIYNVSDRVFFGSKKKNVLEVTVSKESANAGVNLAERRADYW
NFGGIFRPVFIVAKPAQNIDRLAIDAKADGNFYADCFLNMAVEGARIHTVITDVKGKKVA
ENTSDVRTGSDHASINFTVKSPELWTAETPTMYQATFTLLDKAGKTLHVENQKFGFRTIE
TRESDGLYINGQRVMIKGVNRHSFRPESGRTLSKAKNIEDVLLIKSMNMNAVRLSHYPAD
PEFFEACDSLGLYVMDELSGWHGKHETINGQKLVKEMITRDVNHPCIIWWSNGNEKGWNT
ELDGEFHKYDPQKRPVLHPQGNFSGYETMHYRSYGESQNYMRLPEIFMPTEFLHGLYDGG
HGAGLYDYWEMMRKHPRCAGGFLWVLADEGVKRVDMNGFIDNCGNYGADGIVGPHHEKEG
SYFTIKQVWCPIQIRVDSLDSQFDGKLRIENRYDFLNANTCRFTYKYVQLPSVTDKGGMK
VMKQGEVNCPDIPAHGVGTLTIPAAMKGANALLLTVTDKNGNDLFTWSYKLEDIAGLQQV
SAGNKPSYKETADALTVDAGGRTFTFSQKDGQLKGVKIGSRTISLTNGPRFIAAKRSDRS
MDQFYNHDDKEAEKKKTQYTTFEDAGCFTGFSVREEGNNVVVTANYKLGCFDQAVWTISP
DGTAAIDFTYNFSGVVDLMGVMFDYPEDKVLSKRWVGDGPYRVWQNRLHGPQLGVWENEY
NDPIPAESFTYPEFKGYFANVQWMTLETQEGMISICNRTPQNYVGVYQPRDGRDGLLYTF
PVTGISLMKVIPPVRNKVNTTDLIGPSSQAFWADGEYGGGITLKFE