Protein Info for ABI39_RS13345 in Phocaeicola dorei CL03T12C01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 22 to 43 (22 residues), see Phobius details amino acids 49 to 66 (18 residues), see Phobius details amino acids 78 to 94 (17 residues), see Phobius details amino acids 106 to 123 (18 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 193 to 214 (22 residues), see Phobius details amino acids 221 to 239 (19 residues), see Phobius details amino acids 245 to 262 (18 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details amino acids 356 to 378 (23 residues), see Phobius details amino acids 390 to 407 (18 residues), see Phobius details amino acids 413 to 429 (17 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (445 amino acids)

>ABI39_RS13345 hypothetical protein (Phocaeicola dorei CL03T12C01)
MIDSIFIFFLILYFIFPLNKKYGLQISCSLYILMIFLIPNGIITLPGGISFNRTILSFYL
LVVVIFKEKKLDLGISKYVFFYYISLLLVIFLTSDEVPISFQLKTFIRSFVADGVLLYVL
YYTTIKHTNAYVFFSWTIIILILITTIYGFFNASFLGSNPYLKLFSFAPDQQYEMEIEMG
DSGRLFGRVTSIYLSPWYCGNFLTMSGIFLIFLYQKIRKRLWEIAFLGIIFFSFWIFVII
SGNRSALAILIIFYTIYMYSKIQLWKSVAISITIIILFIFVITPNVPFIETYIESLYSNS
NKVTGSSVNGRIEQLFGCYEEWSNAPLFGHGYNWSSYYRFSHNGNQHPTMLGFESIIFIQ
VCNLGLYGCIMTYYMFYYLYNRINKKAKDAIYIMCGFLSYSLVTGIYGSYETFIVFYITS
VQLLASRNLKYQSKKYVKKWITKLK