Protein Info for ABI39_RS13260 in Phocaeicola dorei CL03T12C01

Annotation: family 78 glycoside hydrolase catalytic domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 714 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF21209: Bac_rhamnosid-like_N" amino acids 62 to 277 (216 residues), 345.1 bits, see alignment E=3e-107 PF17389: Bac_rhamnosid6H" amino acids 301 to 634 (334 residues), 99.7 bits, see alignment E=5.5e-32 PF06202: GDE_C" amino acids 382 to 541 (160 residues), 23.4 bits, see alignment E=6.8e-09 PF01204: Trehalase" amino acids 458 to 546 (89 residues), 22.8 bits, see alignment E=1e-08 PF17390: Bac_rhamnosid_C" amino acids 637 to 673 (37 residues), 26.2 bits, see alignment 1.5e-09

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_2648)

Predicted SEED Role

"Alfa-L-rhamnosidase (EC 3.2.1.40)" in subsystem L-rhamnose utilization (EC 3.2.1.40)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.40

Use Curated BLAST to search for 3.2.1.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (714 amino acids)

>ABI39_RS13260 family 78 glycoside hydrolase catalytic domain (Phocaeicola dorei CL03T12C01)
MKNRLATLVGALALSAAASAQTWIWYPGDYEIWLGNQMNNRRTERGAFFPPFWKTDSHYV
VVEFSKKLDLAEPEEIFIAAEGKYNVKLDGKLQFGMPSTLKLPAGKHSLNIKVWNQSTPP
TIYVKGKTVNTDKTWKVTYEDKEWIDESGKASDTSATVYMDAGCWNFDGATQLPSKFSLV
RKPMKAVSSTPRKEGVLYDFGKETFGYITLKDVKGKGTIHIYYGESPEEALDTEYCETLD
KLLAEPGQITDLAIRNTRKLYDEYTLDNSKAFRYVYVTCDPGVTMQDVSMQYEYLPEEYR
GSFKCNDEELNRIWEVGAYTMHLTTREFFIDGIKRDRWVWSGDAIQSYLMNYYLFFDNET
VKRTIWLLRGKDPVTSHSNTIMDYTFYWFLSIYDYYMYSGDKDFVTQLYPRMQSMMDYVL
GRTNANGMVEGMTGDWVFVDWADGYLDKKGELSFEQVLFCKSLETMALCASLAGNTADKT
KYEKLASALHSKLEPAFWNEQKQAMVHNRIQGKQSESVTRYANMFSVFFNYLNADKQQAI
KHSVLQNDSILKITTPYMRFYELEALCALGEQESVMKEMKAYWGGMLKEGATSFWEKYNP
EETGTQHLAMYGRPYGKSLCHAWGASPIYLLGKYYLGVKPTKPGYEEYSVTPCLGGLKWM
EGTVPTPYGNIHIYMDKKVIRIKSDGGKGILNIPTRKGMKAMTIEPGKEQVFKY