Protein Info for ABI39_RS13245 in Phocaeicola dorei CL03T12C01

Annotation: family 78 glycoside hydrolase catalytic domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1324 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF08531: Bac_rhamnosid_N" amino acids 176 to 349 (174 residues), 182.2 bits, see alignment E=2.3e-57 PF05592: Bac_rhamnosid" amino acids 362 to 460 (99 residues), 94.5 bits, see alignment 1e-30 PF17389: Bac_rhamnosid6H" amino acids 465 to 824 (360 residues), 370.2 bits, see alignment E=3.5e-114 PF17390: Bac_rhamnosid_C" amino acids 828 to 903 (76 residues), 66.7 bits, see alignment 3.8e-22 PF13088: BNR_2" amino acids 966 to 1303 (338 residues), 294.6 bits, see alignment E=2.1e-91

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_2645)

Predicted SEED Role

"Alfa-L-rhamnosidase (EC 3.2.1.40)" in subsystem L-rhamnose utilization (EC 3.2.1.40)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.40

Use Curated BLAST to search for 3.2.1.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1324 amino acids)

>ABI39_RS13245 family 78 glycoside hydrolase catalytic domain (Phocaeicola dorei CL03T12C01)
MHIMKKQVLLIILLALPLWLKAADVSVTGLRTEQMVDPMGLDTAVPRMSWRLESSQRNVM
QTAYRILVASSPELLAQDKGDLWDSGKVESDASVWIPYQGKRLKSNQRVYWKVRSYTNRG
ETEWSEPARWGMGPLGEIHWGGRWIGWDAVFAWDREDSHSRLSSRYLRTEFKTQAKEIKY
ATLHLCGLGMYELFINGQRIGDQVLAPAPSDYRRTVLYNSFDVTKQVAGGNADNAIGVTL
GNGRFYTMRQNYKPYKIPTFGYPKLRLNLIIEYTDGSIQRINSDEKWRLTAQGPIRSNNE
YDGEIYDARMELGNWTQPGYDDSKWLKAQRVSLPYGTLRGNTAPNMKVMKTLKPAVFKQY
GNRYMIDFGQNMAGWVRINIAKAAAGDTICIRYAERVKNDGTELDVENLRHSQSTDYYIC
NGKENNTSWSSRFSYHGFQYVEVTGYKNLKAEDLVAEVVYDDLEDNGTFECSNDIMNRVY
RNAWWGISSNYKGVPLDCPQRDERQPWLGDHAMGTWGESFMFNNGNTYAKWADDIREAQR
EDGCIPDICPAYYNYYTSEMTWSSTFPVICDMVYEQFGNIEPIRKNYAAIKKWMHHIRSE
FTTEDGVINADKYGDWCMPPESPELIHSQDPARKTDGALIATAYYYKVSQMLAKFARLQG
LEDEAKEFEKDAAKIKDCFNARFLTVKKGTSPVQMPHVLYPDSIFYGNNTVTANILPLAF
DMVPEAYREEVEKNVITGIITRNKGHISSGVIGMNWMMRELTRMGRGDVAFLLASNKTYP
SYGYMIEKGATAIWELWNGDTANRWMNSCNHVMILGDLLTWYFRDLAGFNPAQPAYKQII
FKPDFSIQELSYVKASHNTLYGKMISNWKKTLTHLEWDITIPCNTTALVYLPTLDEKAVK
DKDVTFVRREGNSTVWSVPSGNYHFSVSMDPSLGKNRAGIVEDQFLYEQASFPECHGATI
VELKNGDLVASFFGGTKERNPDCCIWVCRKPKGATEWSAPYLAADGVFSLDDPQAVLAGI
TAESTPADAGPVASTFKGDKSRARRKACWNPVLFQIPGGDLILFYKIGLKVADWSGWLVR
SKDGGKTWSQREPLPKGFLGPIKNKPEYVDGRIICPSSTEGDGGWRIHFEISDDKGKTWK
MVGPVEAEMSVPTALRKANAANVDDQEGGEAIKGEGEKPIYAIQPSILRHKDGRLQVLCR
TRNAQIATSWSSDNGETWSKVTLLDVPNNNSGTDAVTMKDGRHVLIYNDFSTLPGTPKGP
RTPLCVAVSDDGIHWKNVMTLEDSPISQYSYPSIIQGKDGKLHAVYTWRRQRVAYKELDL
SKLK