Protein Info for ABI39_RS12590 in Phocaeicola dorei CL03T12C01

Annotation: DUF1282 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 189 transmembrane" amino acids 34 to 55 (22 residues), see Phobius details amino acids 62 to 89 (28 residues), see Phobius details amino acids 109 to 129 (21 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details PF04893: Yip1" amino acids 12 to 175 (164 residues), 79.1 bits, see alignment E=1.8e-26

Best Hits

KEGG orthology group: None (inferred from 97% identity to bvu:BVU_2526)

Predicted SEED Role

"FIG00402761: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (189 amino acids)

>ABI39_RS12590 DUF1282 family protein (Phocaeicola dorei CL03T12C01)
MNYKDLFKRVIALISSPAKVWEEISREEDRRKVLGAFVYPMIGLCGLSVFIGTFIGNTEG
VAAFQIAMTRCCAIFVSLFGGYFLAAYAIDQLGKKLLGREDQYELNQQFVGYSMVVTFVL
DIVSGLFSISILHWILQFYTVFVVFEGARTLMKVNEEKLTRYTLIASVIIIVCPALIAAV
FNELSVILN