Protein Info for ABI39_RS12575 in Phocaeicola dorei CL03T12C01

Annotation: sodium:glutamate symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 81 to 99 (19 residues), see Phobius details amino acids 120 to 141 (22 residues), see Phobius details amino acids 177 to 200 (24 residues), see Phobius details amino acids 244 to 265 (22 residues), see Phobius details amino acids 272 to 291 (20 residues), see Phobius details amino acids 336 to 359 (24 residues), see Phobius details amino acids 372 to 392 (21 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details amino acids 432 to 451 (20 residues), see Phobius details PF03616: Glt_symporter" amino acids 31 to 365 (335 residues), 69.1 bits, see alignment E=1.5e-23

Best Hits

KEGG orthology group: K03312, glutamate:Na+ symporter, ESS family (inferred from 96% identity to bvu:BVU_2517)

Predicted SEED Role

"Sodium/glutamate symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (459 amino acids)

>ABI39_RS12575 sodium:glutamate symporter (Phocaeicola dorei CL03T12C01)
MNTVFFNEYIQTSPKFMTDFTPWTLFVDTGIISVLLLLGKLMRVKIRFIQKLFIPPSLLA
GFMGLALGPHGFGIIPLSTQTGTYAGILIAFIFGALPLTSQKAAKGDADNIGSMWAYSQA
GMLLQWAFGGLLGLIVLNRIWPLNPAFGITMPSGYCGGHGTAAAIGQAFSQFGYDEILTL
AMTAATFGIVAAVIIGLIIIKWGTKKGHTSFLANYDDLPHELQTGLLPGDKRESMGESSC
SSISIDSLTFNLIIVTVIALGGYCISKTVSHFMPGFELPVFSCAFVVGMFIKKIFDKTKT
SDYLCPQTIGHISGTFTDFLVAFGIASIKISVVIEYIIPLLILLVSGLIATLIYVLVMAR
KLMKDCWFEKAIFTWGWFTGTMAMGIALLRVADPKMRSRCLDNYALAYLFIAPVEISLIT
FAPVAFLNGYGLMFTGICLAAGLAVLATAYIKGWSIKKQ