Protein Info for ABI39_RS12005 in Phocaeicola dorei CL03T12C01

Annotation: O-antigen ligase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 5 to 23 (19 residues), see Phobius details amino acids 29 to 48 (20 residues), see Phobius details amino acids 60 to 76 (17 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 161 to 179 (19 residues), see Phobius details amino acids 191 to 207 (17 residues), see Phobius details amino acids 213 to 230 (18 residues), see Phobius details amino acids 242 to 261 (20 residues), see Phobius details amino acids 335 to 352 (18 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>ABI39_RS12005 O-antigen ligase family protein (Phocaeicola dorei CL03T12C01)
MKLSIIALYVICSYFLLTAIAGLGNMLGIGILLKLDLILLLSGLYIFFSSSVKKMEGIDI
LLLIFLLCISLSSAFNNYSTDLFYYGLRYQILLTIFFFVGKSEWFADWKFFDKMQMPIIA
VSLIGLYLYLAQPSWYIAWKLQSTTEFSSESRILEMTRLSAFWQYPYWVSYGCALLYHYK
LYTMFTSNVKKQDVLVIFFLFFIIVLTQQRAPLLFIVLSTVFFYIYSFCTKSKYQYKKFR
RILNISIIALVMGTLYVLLNVLDEDRILFMINKIISADSGNTSFLSERLGLYKDFQSMPV
TFWGDGIGRYSHLAYQQNKLAITDCQYIQTLHETGYFGLIGYILLFIYLIVNGMRNIKLN
IFEIGVLIFYLIAMIGANPLSNQGIHTIFLWICCGRIINNDCLHYKQNEYEKSNCN