Protein Info for ABI39_RS11915 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1013 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 31 to 1013 (983 residues), 958.9 bits, see alignment E=4.3e-292 PF13620: CarboxypepD_reg" amino acids 31 to 86 (56 residues), 36.6 bits, see alignment 7.4e-13 PF13715: CarbopepD_reg_2" amino acids 31 to 111 (81 residues), 64.1 bits, see alignment E=1.4e-21 PF07715: Plug" amino acids 119 to 227 (109 residues), 71.5 bits, see alignment E=1.2e-23 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 203 to 233 (31 residues), 65.9 bits, see alignment (E = 2.1e-22)

Best Hits

KEGG orthology group: None (inferred from 59% identity to bvu:BVU_0602)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1013 amino acids)

>ABI39_RS11915 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKRQRQKLFRVVLAGVLMIFSFMVYAQERIVTGKVYDSSGESIIGASVMVQGTMQGVVTD
IDGAFQLKVQPSQSLVISFLGYQDVILPVGSKNNFKIILEEDSKKLDEVVVVGYATQKKV
NLTGSVASVSAKDIQDIPVANTTTLLQGRLPGLVLTQNGAQAGNDNPEIRIRGIGTFGNN
NPMVLIDGVEGSISQIAEIPSADIESISVLKDAASAAIYGVRAANGVILITTKRGQASSK
VKISYSGSYTLQTPGIVPDYVDGYNWALMKNEVSTGTFSPEALQKLQDGSDPDHYANTNW
LDAVLRNASMHQHHLSVSGGNENTRFMTSVAYSNQDGIMMKTGVERFSFRSNIDTRYKRF
TFGLNLSGNKNNVTTPAVAPSGEGGIMRYVSWFTRPTVPVMYSNGHYGYVDGSSLSAELM
KNPVESMSLGHRSNEYWRFNGKVFAGIDLWDGLKFQTSFAYAFDLNATKSYSPKSPARYD
AEGNIRKAAGETNKEEDYWYRNATWTSENLLTYNKQFDKHNVNVLLGHSVIGSRFYKTTA
SIQGFPTENIYELDGGTINPGAKGNSEEYKLQSFFGRVNYGYDDRYLFEFNIRHDGSSRM
PKANRYATFPSVSGGWVFSNEELMKDYKNFSLGKLRLSWGKLGNQEIGNYAYAATLGASG
NYFFDQGGDKQAGMVQTSVPNEDIKWETTRSINVALDLGFFNNRIQTTFEWFDKKTSDIL
MQLAMPGIFLGSLNAPYQNVGAVRNRGWEWNVNYSDSKGDWVWNVGFNLSHVKNEILEMG
GLEETISGQTINRIGNPIGAYFGYKAIGMYRTEADLQRTNSKGEVIKQNGVAPKLGDIMY
ADLNDDGNITADDRDIIGNPFPKYSYSFNLGASWKNFDLSTFWQGVGGIYRYSWETSTDI
RGNLTERWLDRYSAGNVNASMPALGNTMNDSYSSFWLENSSYLRLKNLEFGYTFRQPGLA
KMGVSSVRVYFAGSNLLTFTSLKNWDPEKTSGDARNDVHPNMRTYSFGLNIQF