Protein Info for ABI39_RS10895 in Phocaeicola dorei CL03T12C01

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1164 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 128 to 1164 (1037 residues), 657.7 bits, see alignment E=4e-201 PF13620: CarboxypepD_reg" amino acids 129 to 197 (69 residues), 35.8 bits, see alignment 1.7e-12 PF13715: CarbopepD_reg_2" amino acids 129 to 209 (81 residues), 54.3 bits, see alignment 2.2e-18 PF07715: Plug" amino acids 217 to 319 (103 residues), 52.5 bits, see alignment E=1.3e-17 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 295 to 325 (31 residues), 58.5 bits, see alignment (E = 4.3e-20) PF00593: TonB_dep_Rec" amino acids 525 to 1106 (582 residues), 58.1 bits, see alignment E=3e-19

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1164 amino acids)

>ABI39_RS10895 SusC/RagA family TonB-linked outer membrane protein (Phocaeicola dorei CL03T12C01)
MSTKLLSETICRKGLMVKCFVALIVFCCSVGEAFAQTDTKVTINVNNVLIRTALDQLQRE
AKIHFVYDEENIDSGKRVSLFYTKTSLNAVLDDFCKQTSLRYEVKRNLILILPSKAEKTT
GKHEPFYMTGVVMDETGESIIGATIMIGGTSQGTVTDIDGRYSLRVTPGDLVSFTFVGMA
DKVVKVQAGKKVVNVKMETNATALADVVVTGYQTLSKERATGSYSVISEKSTKGKLETDV
LSRIEGLVAGINKTSSNSNDVVIRGITTYMGNTKPLYVVDGMPYEGDLASINPTDVQNIT
VLKDAAASSIYGARAANGVIVITTKRGQEGKTKVSYNGSIKLSPKPDFDYLNLMSSSELV
DMQIEGFDYYHTAYENLNKRQAVNPVVSLLYQHERGQLTDGQLADALLPYRTNDNRKQIE
DEFARVGIVHQHNLAISGGSNKNRYMATVNYMGDYGNQKYQSKDRIGFSLKDDVDFFDWL
SADFGVTGSFYRSKGDNGAGSYSSLMSSYPSYYMLRDLQGNPLDFQRTKSDYELQRLQSI
GLMDETYSPIKNRAEESYHNNSNYYRLHAGLKFKILEGLNIDLKYQTEGTYDKNRTLYSN
MSYKVRNMINDAAQYDAATGSLTLNVPKGGQLDESRYESYSYTMRAQVNFNRILGKHAIS
ALGGAERRLVRRTGAQNYYMGYDDNSLGVKPINPLVMSPINGTEALLGSFNWVYGEYNAL
THTEDRYVSFYANGSYTFDERYSLTGSIRIDQSNLFGTDPKYQYRPLWSVGGSWQIANEP
FMEDCTWLNRLNLRMTYGVGGNVPKNAGPYMTVVDSGYNDWVGDFGSYIKNPPNSQLRWE
KTASTNVGLDFSVFNSRLSGSIDYYYKKTTDLLGNRNADPTLGWASLLQNYGSMFNRGVE
LSLQSVNIQNKNFTWGTNLMFSYNKNELTNLEGTKETVFYYSAYNVAAVGYPINSVFSYR
YAGLNPTNGNVLVYNKEGEKVSKVSSIDDMVYSGTRTPKYTASLKNFFSYRDFDFSFMFV
YYGGHVLRDVVAGYMGGAPSANLTRKALNHWRKPGDENIPGVAPSFNRNIYYTDAQTWYS
ADIHVKKADYIKLRDISLSYNLPKNWLRKYFIESAAVTCQISNVWWWAANGDIDPEAYTT
SGYGWGALTLPNPTTYTIGLSLNF