Protein Info for ABI39_RS10530 in Phocaeicola dorei CL03T12C01

Annotation: AI-2E family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 333 transmembrane" amino acids 12 to 43 (32 residues), see Phobius details amino acids 63 to 86 (24 residues), see Phobius details amino acids 137 to 161 (25 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 223 to 251 (29 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details amino acids 294 to 327 (34 residues), see Phobius details PF01594: AI-2E_transport" amino acids 12 to 321 (310 residues), 129 bits, see alignment E=1.2e-41

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_2067)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (333 amino acids)

>ABI39_RS10530 AI-2E family transporter (Phocaeicola dorei CL03T12C01)
MSVKEQYWKYSLITIILGLGLILFIKMSPFMGGILGACTIYIMVRKQMFYLTQEKHFKKS
ITAILLLIEAIMCFLVPLSLAVWLLINKLQTVNVDTTGFIHTVTNLADWLHTKTGYDLLN
AENISSIASILPAIGQFLMGSISSFAVNAFVLVFVLYFMLIGGIQMEKYIYELLPFSDTN
KKNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATVIPIVGT
ALVWFPLAAYLALSGDWTHAIGLLLYCGLIVTNIDNLIRFILQKKMADTHPLITIFGVVI
GLSLFGFMGVIFGPLLLSIFILCVNIFKTQYLK